RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 AEBP2Q6ZN18 517 aaPredicted RBP30.38■■■□□ 2.45
SMC4-220ENST00000488017 CHIC1Q5VXU3 224 aa28.4■■■□□ 2.14
SMC4-220ENST00000488017 SENP3Q9H4L4 574 aaPredicted RBP26.05■■□□□ 1.76
SMC4-220ENST00000488017 PHF23Q9BUL5 403 aaPredicted RBP25.6■■□□□ 1.69
SMC4-220ENST00000488017 FOXD1Q16676 465 aa24.34■■□□□ 1.49
SMC4-220ENST00000488017 POTEDQ86YR6 584 aa23.57■■□□□ 1.36
SMC4-220ENST00000488017 MSH5O43196 834 aa23.05■■□□□ 1.28
SMC4-220ENST00000488017 PIAS4Q8N2W9 510 aaPredicted RBP22.56■■□□□ 1.2
SMC4-220ENST00000488017 PLPPR3Q6T4P5 718 aa22.28■■□□□ 1.16
SMC4-220ENST00000488017 PPP6R1Q9UPN7 881 aa22.24■■□□□ 1.15
SMC4-220ENST00000488017 ADRA2BP18089 450 aa22.12■■□□□ 1.13
SMC4-220ENST00000488017 DMRT2Q9Y5R5 561 aa20.56■□□□□ 0.88
SMC4-220ENST00000488017 MAPK8IP2Q13387 824 aaPredicted RBP20.51■□□□□ 0.87
SMC4-220ENST00000488017 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
SMC4-220ENST00000488017 CACNB1Q02641 598 aaPredicted RBP20.14■□□□□ 0.81
SMC4-220ENST00000488017 DCAF8L1A6NGE4 600 aa19.67■□□□□ 0.74
SMC4-220ENST00000488017 RNF39Q9H2S5 420 aa19.61■□□□□ 0.73
SMC4-220ENST00000488017 HOXD11P31277 338 aaPredicted RBP19.56■□□□□ 0.72
SMC4-220ENST00000488017 PPP4R3CPQ6ZMV5 832 aa19.42■□□□□ 0.7
SMC4-220ENST00000488017 C1QBPQ07021 282 aaKnown RBP19.3■□□□□ 0.68
SMC4-220ENST00000488017 CNKSR2Q8WXI2 1034 aa19.23■□□□□ 0.67
SMC4-220ENST00000488017 RNF216Q9NWF9 866 aaPredicted RBP19.23■□□□□ 0.67
SMC4-220ENST00000488017 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
SMC4-220ENST00000488017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.59■□□□□ 0.57
SMC4-220ENST00000488017 NCBP3Q53F19 620 aaKnown RBP18.5■□□□□ 0.55
SMC4-220ENST00000488017 POTEHQ6S545 545 aa18.35■□□□□ 0.53
SMC4-220ENST00000488017 NPM3O75607 178 aaKnown RBP18.21■□□□□ 0.51
SMC4-220ENST00000488017 U3KPZ7 1027 aaPredicted RBP18.14■□□□□ 0.49
SMC4-220ENST00000488017 DSG3P32926 999 aa18.13■□□□□ 0.49
SMC4-220ENST00000488017 CAPN15O75808 1086 aa18.05■□□□□ 0.48
SMC4-220ENST00000488017 SPINK5Q9NQ38 1064 aaPredicted RBP18.05■□□□□ 0.48
SMC4-220ENST00000488017 APLP2Q06481 763 aa17.6■□□□□ 0.41
SMC4-220ENST00000488017 TRHP20396 242 aaPredicted RBP17.59■□□□□ 0.41
SMC4-220ENST00000488017 ZNF219Q9P2Y4 722 aaPredicted RBP17.58■□□□□ 0.4
SMC4-220ENST00000488017 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
SMC4-220ENST00000488017 ABCB7O75027 752 aa17.55■□□□□ 0.4
SMC4-220ENST00000488017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.43■□□□□ 0.38
SMC4-220ENST00000488017 HNRNPUL2Q1KMD3 747 aaKnown RBP17.43■□□□□ 0.38
SMC4-220ENST00000488017 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
SMC4-220ENST00000488017 SAMD1Q6SPF0 538 aaPredicted RBP17.29■□□□□ 0.36
SMC4-220ENST00000488017 KCNA4P22459 653 aa17.27■□□□□ 0.36
SMC4-220ENST00000488017 CHRDL2Q6WN34 429 aa17.19■□□□□ 0.34
SMC4-220ENST00000488017 POLA2Q14181 598 aa17■□□□□ 0.31
SMC4-220ENST00000488017 SP7Q8TDD2 431 aaPredicted RBP16.9■□□□□ 0.3
SMC4-220ENST00000488017 MYCNP04198 464 aaPredicted RBP16.87■□□□□ 0.29
SMC4-220ENST00000488017 AKT1S1Q96B36 256 aa16.8■□□□□ 0.28
SMC4-220ENST00000488017 PIP4P2Q8N4L2 257 aa16.64■□□□□ 0.25
SMC4-220ENST00000488017 ZBTB12Q9Y330 459 aaPredicted RBP16.64■□□□□ 0.25
SMC4-220ENST00000488017 REM2Q8IYK8 340 aaPredicted RBP16.62■□□□□ 0.25
SMC4-220ENST00000488017 HAX1O00165 279 aa16.5■□□□□ 0.23
SMC4-220ENST00000488017 ATF5Q9Y2D1 282 aaPredicted RBP16.5■□□□□ 0.23
SMC4-220ENST00000488017 FXR2P51116 673 aaKnown RBP eCLIP16.46■□□□□ 0.23
SMC4-220ENST00000488017 OSCARQ8IYS5 282 aa16.46■□□□□ 0.23
SMC4-220ENST00000488017 PITPNM1O00562 1244 aa16.44■□□□□ 0.22
SMC4-220ENST00000488017 FOXD4L1Q9NU39 408 aa16.34■□□□□ 0.21
SMC4-220ENST00000488017 SLC4A1APQ9BWU0 796 aaKnown RBP16.31■□□□□ 0.2
SMC4-220ENST00000488017 EVX2Q03828 476 aa16.25■□□□□ 0.19
SMC4-220ENST00000488017 SPDYE2BA6NHP3 402 aa16.07■□□□□ 0.16
SMC4-220ENST00000488017 SPDYE6P0CI01 402 aa16.07■□□□□ 0.16
SMC4-220ENST00000488017 SPDYE2Q495Y8 402 aa16.07■□□□□ 0.16
SMC4-220ENST00000488017 PRKAR2AP13861 404 aaKnown RBP16.01■□□□□ 0.15
SMC4-220ENST00000488017 C19orf67A6NJJ6 358 aa15.96■□□□□ 0.15
SMC4-220ENST00000488017 ATXN8OSP0DMR3 200 aa15.94■□□□□ 0.14
SMC4-220ENST00000488017 SPDYE1Q8NFV5 336 aaPredicted RBP15.93■□□□□ 0.14
SMC4-220ENST00000488017 FBLN2P98095 1184 aa15.92■□□□□ 0.14
SMC4-220ENST00000488017 CLEC11AQ9Y240 323 aa15.89■□□□□ 0.13
SMC4-220ENST00000488017 ZBTB22O15209 634 aa15.86■□□□□ 0.13
SMC4-220ENST00000488017 GABBR2O75899 941 aa15.86■□□□□ 0.13
SMC4-220ENST00000488017 LHX8Q68G74 356 aa15.83■□□□□ 0.12
SMC4-220ENST00000488017 SSUH2Q9Y2M2 353 aa15.78■□□□□ 0.12
SMC4-220ENST00000488017 ZNF692Q9BU19 519 aaPredicted RBP15.74■□□□□ 0.11
SMC4-220ENST00000488017 MKRN4PQ13434 485 aaPredicted RBP15.73■□□□□ 0.11
SMC4-220ENST00000488017 CHADLQ6NUI6 762 aa15.66■□□□□ 0.1
SMC4-220ENST00000488017 PRR29P0C7W0 189 aa15.57■□□□□ 0.08
SMC4-220ENST00000488017 POTEIP0CG38 1075 aa15.52■□□□□ 0.08
SMC4-220ENST00000488017 PABPN1Q86U42 306 aaKnown RBP eCLIP15.48■□□□□ 0.07
SMC4-220ENST00000488017 CD44P16070 742 aaKnown RBP15.46■□□□□ 0.07
SMC4-220ENST00000488017 CLCN6P51797 869 aa15.45■□□□□ 0.06
SMC4-220ENST00000488017 FARP1Q9Y4F1 1045 aaPredicted RBP15.41■□□□□ 0.06
SMC4-220ENST00000488017 PLSCR2Q9NRY7 297 aa15.31■□□□□ 0.04
SMC4-220ENST00000488017 DCBLD2Q96PD2 775 aa15.28■□□□□ 0.04
SMC4-220ENST00000488017 ZNF579Q8NAF0 562 aaKnown RBP15.22■□□□□ 0.03
SMC4-220ENST00000488017 ZRANB1Q9UGI0 708 aa15.13■□□□□ 0.01
SMC4-220ENST00000488017 OTUD5Q96G74 571 aa15.07■□□□□ 0
SMC4-220ENST00000488017 GALR2O43603 387 aaPredicted RBP15.04■□□□□ -0
SMC4-220ENST00000488017 CSRNP3Q8WYN3 585 aa15.04■□□□□ -0
SMC4-220ENST00000488017 CREBZFQ9NS37 354 aa15.04■□□□□ -0
SMC4-220ENST00000488017 POTEB2H3BUK9 544 aa14.99□□□□□ -0.01
SMC4-220ENST00000488017 STAG3Q9UJ98 1225 aa14.96□□□□□ -0.01
SMC4-220ENST00000488017 POTEMA6NI47 508 aa14.93□□□□□ -0.02
SMC4-220ENST00000488017 PAK3O75914 559 aaPredicted RBP14.88□□□□□ -0.03
SMC4-220ENST00000488017 POTEGQ6S5H5 508 aa14.87□□□□□ -0.03
SMC4-220ENST00000488017 PHF12Q96QT6 1004 aa14.86□□□□□ -0.03
SMC4-220ENST00000488017 PELP1Q8IZL8 1130 aaKnown RBP14.82□□□□□ -0.04
SMC4-220ENST00000488017 PCDH10Q9P2E7 1040 aa14.8□□□□□ -0.04
SMC4-220ENST00000488017 NPM1P06748 294 aaKnown RBP eCLIP14.75□□□□□ -0.05
SMC4-220ENST00000488017 EHMT2Q96KQ7 1210 aa14.74□□□□□ -0.05
SMC4-220ENST00000488017 ASTLQ6HA08 431 aaPredicted RBP14.72□□□□□ -0.05
SMC4-220ENST00000488017 MNX1P50219 401 aaPredicted RBP14.71□□□□□ -0.05
SMC4-220ENST00000488017 METRNQ9UJH8 293 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 264.3 ms