RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 GM2AP17900 193 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 DDIT3P35638 169 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 CDKN1AP38936 164 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 HALP42357 657 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 METAP2P50579 478 aaKnown RBP eCLIP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 RNPS1Q15287 305 aaKnown RBP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 C2orf68Q2NKX9 166 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 LCTLQ6UWM7 567 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 NFE4Q86UQ8 179 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 CPOQ8IVL8 374 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 RNF113BQ8IZP6 322 aaKnown RBP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 HUS1BQ8NHY5 278 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 DUSP19Q8WTR2 217 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 ABTB1Q969K4 478 aaPredicted RBP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 NDST4Q9H3R1 872 aa4.91□□□□□ -1.62
PRPF39-209ENST00000556353 ROCK2O75116 1388 aaKnown RBP4.91□□□□□ -1.62
PRPF39-209ENST00000556353 MAP2P11137 1827 aaKnown RBP4.9□□□□□ -1.62
PRPF39-209ENST00000556353 TNS2Q63HR2 1409 aa4.9□□□□□ -1.62
PRPF39-209ENST00000556353 PKD1L3Q7Z443 1732 aa4.9□□□□□ -1.62
PRPF39-209ENST00000556353 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 TEX13CA0A0J9YWL9 993 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 LILRA5A6NI73 299 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 ITGA2P17301 1181 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 BDKRB2P30411 391 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 RGS19P49795 217 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 ZNF34Q8IZ26 560 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 C1orf87Q8N0U7 546 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 SPATA6LQ8N4H0 392 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 ZCCHC10Q8TBK6 192 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 H2AFJQ9BTM1 129 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 KCNN2Q9H2S1 579 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 PPP1R3EQ9H7J1 279 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 SCRT2Q9NQ03 307 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 SLC25A10Q9UBX3 287 aaPredicted RBP4.9□□□□□ -1.63
PRPF39-209ENST00000556353 TTC7AQ9ULT0 858 aaPredicted RBP4.9□□□□□ -1.63
PRPF39-209ENST00000556353 BRD4O60885 1362 aaPredicted RBP4.9□□□□□ -1.63
PRPF39-209ENST00000556353 PARD3Q8TEW0 1356 aa4.9□□□□□ -1.63
PRPF39-209ENST00000556353 C5P01031 1676 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 BCL9O00512 1426 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 EIF3FO00303 357 aaPredicted RBP4.89□□□□□ -1.63
PRPF39-209ENST00000556353 PIP5K1CO60331 668 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 ZG16O60844 167 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 SERPINB2P05120 415 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 CD53P19397 219 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 TIMP3P35625 211 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 GABRB2P47870 512 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 UFM1P61960 85 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 PDE1BQ01064 536 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 GPATCH4Q5T3I0 446 aaKnown RBP4.89□□□□□ -1.63
PRPF39-209ENST00000556353 NAA35Q5VZE5 725 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 GGNBP1Q5YKI7 109 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 LRRTM4Q86VH4 590 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 EPHX4Q8IUS5 362 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 OR2AK2Q8NG84 335 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 LRRC1Q9BTT6 524 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 GPR63Q9BZJ6 419 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 FKRPQ9H9S5 495 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 MMP25Q9NPA2 562 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 HINT3Q9NQE9 182 aaKnown RBP4.89□□□□□ -1.63
PRPF39-209ENST00000556353 ERVK-11Q9UQG0 969 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 LOXL2Q9Y4K0 774 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 UBR3Q6ZT12 1888 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 TTC21BQ7Z4L5 1316 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 A0A1W2PP64 1363 aa4.89□□□□□ -1.63
PRPF39-209ENST00000556353 TAF4O00268 1085 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 DVL1O14640 695 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 EDIL3O43854 480 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 PRSS1P07477 247 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 COX7A2P14406 83 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 DVL1P1P54792 670 aaPredicted RBP4.88□□□□□ -1.63
PRPF39-209ENST00000556353 SORDQ00796 357 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 CAMK1Q14012 370 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 TAF12Q16514 161 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 SLC24A4Q8NFF2 622 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 GRAPLQ8TC17 118 aaPredicted RBP4.88□□□□□ -1.63
PRPF39-209ENST00000556353 KLHL15Q96M94 604 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 ZNF583Q96ND8 569 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 MTERF1Q99551 399 aaKnown RBP4.88□□□□□ -1.63
PRPF39-209ENST00000556353 CMKLR1Q99788 373 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 LBHD1Q9BQE6 289 aaPredicted RBP4.88□□□□□ -1.63
PRPF39-209ENST00000556353 PLEKHA4Q9H4M7 779 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 TMEM160Q9NX00 188 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 A4GNTQ9UNA3 340 aa4.88□□□□□ -1.63
PRPF39-209ENST00000556353 KTN1Q86UP2 1357 aaKnown RBP4.88□□□□□ -1.63
PRPF39-209ENST00000556353 MEGF6O75095 1541 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 TNPO2O14787 897 aaKnown RBP4.87□□□□□ -1.63
PRPF39-209ENST00000556353 SEC14L5O43304 696 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 AMBPP02760 352 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 MYOD1P15172 320 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 CORO1AP31146 461 aaKnown RBP4.87□□□□□ -1.63
PRPF39-209ENST00000556353 ATP12AP54707 1039 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 LINC01547P58512 204 aaPredicted RBP4.87□□□□□ -1.63
PRPF39-209ENST00000556353 NAE1Q13564 534 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 PDSS1Q5T2R2 415 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 PLEKHA7Q6IQ23 1121 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 KCTD8Q6ZWB6 473 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 ANKRD42Q8N9B4 389 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 WDSUB1Q8N9V3 476 aa4.87□□□□□ -1.63
PRPF39-209ENST00000556353 NAP1L5Q96NT1 182 aaPredicted RBP4.87□□□□□ -1.63
PRPF39-209ENST00000556353 FAM110AQ9BQ89 295 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms