RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 AEBP2Q6ZN18 517 aaPredicted RBP32.07■■■□□ 2.72
PRPF39-209ENST00000556353 CHIC1Q5VXU3 224 aa31■■■□□ 2.55
PRPF39-209ENST00000556353 SENP3Q9H4L4 574 aaPredicted RBP27.34■■□□□ 1.97
PRPF39-209ENST00000556353 PHF23Q9BUL5 403 aaPredicted RBP27.19■■□□□ 1.94
PRPF39-209ENST00000556353 FOXD1Q16676 465 aa25.38■■□□□ 1.65
PRPF39-209ENST00000556353 PLPPR3Q6T4P5 718 aa25.04■■□□□ 1.6
PRPF39-209ENST00000556353 PPP6R1Q9UPN7 881 aa24.11■■□□□ 1.45
PRPF39-209ENST00000556353 ADRA2BP18089 450 aa24.09■■□□□ 1.45
PRPF39-209ENST00000556353 PIAS4Q8N2W9 510 aaPredicted RBP23.88■■□□□ 1.41
PRPF39-209ENST00000556353 MSH5O43196 834 aa23.61■■□□□ 1.37
PRPF39-209ENST00000556353 POTEDQ86YR6 584 aa22.11■■□□□ 1.13
PRPF39-209ENST00000556353 SCAF1Q9H7N4 1312 aaKnown RBP22.1■■□□□ 1.13
PRPF39-209ENST00000556353 PPP4R3CPQ6ZMV5 832 aa22■■□□□ 1.11
PRPF39-209ENST00000556353 MAPK8IP2Q13387 824 aaPredicted RBP21.96■■□□□ 1.11
PRPF39-209ENST00000556353 DMRT2Q9Y5R5 561 aa21.74■■□□□ 1.07
PRPF39-209ENST00000556353 CNKSR2Q8WXI2 1034 aa21.47■■□□□ 1.03
PRPF39-209ENST00000556353 NCBP3Q53F19 620 aaKnown RBP21.35■■□□□ 1.01
PRPF39-209ENST00000556353 HOXD11P31277 338 aaPredicted RBP21.14■□□□□ 0.97
PRPF39-209ENST00000556353 RNF216Q9NWF9 866 aaPredicted RBP21.14■□□□□ 0.97
PRPF39-209ENST00000556353 KCNA4P22459 653 aa21.04■□□□□ 0.96
PRPF39-209ENST00000556353 NPM3O75607 178 aaKnown RBP20.99■□□□□ 0.95
PRPF39-209ENST00000556353 DCAF8L1A6NGE4 600 aa20.87■□□□□ 0.93
PRPF39-209ENST00000556353 DNAJC5BQ9UF47 199 aa20.43■□□□□ 0.86
PRPF39-209ENST00000556353 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.19■□□□□ 0.82
PRPF39-209ENST00000556353 RNF39Q9H2S5 420 aa20.16■□□□□ 0.82
PRPF39-209ENST00000556353 SLC4A1APQ9BWU0 796 aaKnown RBP20■□□□□ 0.79
PRPF39-209ENST00000556353 CACNB1Q02641 598 aaPredicted RBP19.93■□□□□ 0.78
PRPF39-209ENST00000556353 C1QBPQ07021 282 aaKnown RBP19.92■□□□□ 0.78
PRPF39-209ENST00000556353 SLC4A2P04920 1241 aa19.89■□□□□ 0.77
PRPF39-209ENST00000556353 U3KPZ7 1027 aaPredicted RBP19.78■□□□□ 0.76
PRPF39-209ENST00000556353 FOXD4L1Q9NU39 408 aa19.51■□□□□ 0.71
PRPF39-209ENST00000556353 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.47■□□□□ 0.71
PRPF39-209ENST00000556353 HNRNPUL2Q1KMD3 747 aaKnown RBP19.47■□□□□ 0.71
PRPF39-209ENST00000556353 MYCNP04198 464 aaPredicted RBP19.43■□□□□ 0.7
PRPF39-209ENST00000556353 SAMD1Q6SPF0 538 aaPredicted RBP19.37■□□□□ 0.69
PRPF39-209ENST00000556353 APLP2Q06481 763 aa19.36■□□□□ 0.69
PRPF39-209ENST00000556353 SPINK5Q9NQ38 1064 aaPredicted RBP19.34■□□□□ 0.69
PRPF39-209ENST00000556353 ZBTB22O15209 634 aa19.33■□□□□ 0.68
PRPF39-209ENST00000556353 CAPN15O75808 1086 aa19.32■□□□□ 0.68
PRPF39-209ENST00000556353 TRHP20396 242 aaPredicted RBP19.13■□□□□ 0.65
PRPF39-209ENST00000556353 ZNF219Q9P2Y4 722 aaPredicted RBP19.13■□□□□ 0.65
PRPF39-209ENST00000556353 DSG3P32926 999 aa19.05■□□□□ 0.64
PRPF39-209ENST00000556353 EHMT2Q96KQ7 1210 aa19■□□□□ 0.63
PRPF39-209ENST00000556353 CSRNP3Q8WYN3 585 aa18.93■□□□□ 0.62
PRPF39-209ENST00000556353 ABCB7O75027 752 aa18.89■□□□□ 0.61
PRPF39-209ENST00000556353 ATF5Q9Y2D1 282 aaPredicted RBP18.88■□□□□ 0.61
PRPF39-209ENST00000556353 ATXN8OSP0DMR3 200 aa18.86■□□□□ 0.61
PRPF39-209ENST00000556353 POLA2Q14181 598 aa18.72■□□□□ 0.59
PRPF39-209ENST00000556353 ZBTB12Q9Y330 459 aaPredicted RBP18.43■□□□□ 0.54
PRPF39-209ENST00000556353 RBM42Q9BTD8 480 aaKnown RBP18.22■□□□□ 0.51
PRPF39-209ENST00000556353 FBLN2P98095 1184 aa18.2■□□□□ 0.5
PRPF39-209ENST00000556353 OSCARQ8IYS5 282 aa18.1■□□□□ 0.49
PRPF39-209ENST00000556353 MKRN4PQ13434 485 aaPredicted RBP18.05■□□□□ 0.48
PRPF39-209ENST00000556353 AKT1S1Q96B36 256 aa17.89■□□□□ 0.45
PRPF39-209ENST00000556353 SPDYE2BA6NHP3 402 aa17.87■□□□□ 0.45
PRPF39-209ENST00000556353 SPDYE6P0CI01 402 aa17.87■□□□□ 0.45
PRPF39-209ENST00000556353 SPDYE2Q495Y8 402 aa17.87■□□□□ 0.45
PRPF39-209ENST00000556353 ZNF692Q9BU19 519 aaPredicted RBP17.75■□□□□ 0.43
PRPF39-209ENST00000556353 REM2Q8IYK8 340 aaPredicted RBP17.7■□□□□ 0.42
PRPF39-209ENST00000556353 SSUH2Q9Y2M2 353 aa17.67■□□□□ 0.42
PRPF39-209ENST00000556353 CHRDL2Q6WN34 429 aa17.58■□□□□ 0.4
PRPF39-209ENST00000556353 SPDYE4A6NLX3 237 aa17.51■□□□□ 0.39
PRPF39-209ENST00000556353 PABPN1Q86U42 306 aaKnown RBP eCLIP17.5■□□□□ 0.39
PRPF39-209ENST00000556353 PITPNM1O00562 1244 aa17.49■□□□□ 0.39
PRPF39-209ENST00000556353 POTEHQ6S545 545 aa17.45■□□□□ 0.38
PRPF39-209ENST00000556353 SPDYE1Q8NFV5 336 aaPredicted RBP17.45■□□□□ 0.38
PRPF39-209ENST00000556353 CLEC11AQ9Y240 323 aa17.39■□□□□ 0.37
PRPF39-209ENST00000556353 PIP4P2Q8N4L2 257 aa17.25■□□□□ 0.35
PRPF39-209ENST00000556353 FXR2P51116 673 aaKnown RBP eCLIP17.24■□□□□ 0.35
PRPF39-209ENST00000556353 PRR29P0C7W0 189 aa17.18■□□□□ 0.34
PRPF39-209ENST00000556353 FKBP8Q14318 412 aa17.17■□□□□ 0.34
PRPF39-209ENST00000556353 STAG3Q9UJ98 1225 aa17.16■□□□□ 0.34
PRPF39-209ENST00000556353 PROM2Q8N271 834 aa17.13■□□□□ 0.33
PRPF39-209ENST00000556353 PRKAR2AP13861 404 aaKnown RBP17.07■□□□□ 0.32
PRPF39-209ENST00000556353 CHADLQ6NUI6 762 aa16.97■□□□□ 0.31
PRPF39-209ENST00000556353 CREBZFQ9NS37 354 aa16.84■□□□□ 0.29
PRPF39-209ENST00000556353 HAX1O00165 279 aa16.83■□□□□ 0.28
PRPF39-209ENST00000556353 FARP1Q9Y4F1 1045 aaPredicted RBP16.79■□□□□ 0.28
PRPF39-209ENST00000556353 FBXO3Q9UK99 471 aa16.69■□□□□ 0.26
PRPF39-209ENST00000556353 C19orf67A6NJJ6 358 aa16.67■□□□□ 0.26
PRPF39-209ENST00000556353 MIER1Q8N108 512 aa16.67■□□□□ 0.26
PRPF39-209ENST00000556353 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
PRPF39-209ENST00000556353 NPM1P06748 294 aaKnown RBP eCLIP16.6■□□□□ 0.25
PRPF39-209ENST00000556353 MNX1P50219 401 aaPredicted RBP16.6■□□□□ 0.25
PRPF39-209ENST00000556353 EVX2Q03828 476 aa16.6■□□□□ 0.25
PRPF39-209ENST00000556353 PLCD3Q8N3E9 789 aa16.6■□□□□ 0.25
PRPF39-209ENST00000556353 SP7Q8TDD2 431 aaPredicted RBP16.6■□□□□ 0.25
PRPF39-209ENST00000556353 CD44P16070 742 aaKnown RBP16.57■□□□□ 0.24
PRPF39-209ENST00000556353 ZBTB47Q9UFB7 747 aaPredicted RBP16.47■□□□□ 0.23
PRPF39-209ENST00000556353 VASPP50552 380 aaPredicted RBP16.44■□□□□ 0.22
PRPF39-209ENST00000556353 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
PRPF39-209ENST00000556353 ZRANB1Q9UGI0 708 aa16.41■□□□□ 0.22
PRPF39-209ENST00000556353 ZNF579Q8NAF0 562 aaKnown RBP16.32■□□□□ 0.2
PRPF39-209ENST00000556353 GABBR2O75899 941 aa16.29■□□□□ 0.2
PRPF39-209ENST00000556353 TSPYL2Q9H2G4 693 aaPredicted RBP16.29■□□□□ 0.2
PRPF39-209ENST00000556353 KLHL34Q8N239 644 aa16.28■□□□□ 0.2
PRPF39-209ENST00000556353 CLCN6P51797 869 aa16.27■□□□□ 0.2
PRPF39-209ENST00000556353 RASEFQ8IZ41 740 aa16.26■□□□□ 0.19
PRPF39-209ENST00000556353 NUBP1P53384 320 aa16.24■□□□□ 0.19
PRPF39-209ENST00000556353 PHF12Q96QT6 1004 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms