RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 PLEKHA5Q9HAU0 1116 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 APOBEC3GQ9HC16 384 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 TMEM184CQ9NVA4 438 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 DPP3Q9NY33 737 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 ITGA11Q9UKX5 1188 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 MAFFQ9ULX9 164 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 UBQLN1Q9UMX0 589 aaKnown RBP3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SLC27A6Q9Y2P4 619 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 DERAQ9Y315 318 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 HYOU1Q9Y4L1 999 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 PCDHB2Q9Y5E7 798 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 SNX13Q9Y5W8 968 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 UMODL1Q5DID0 1318 aa3.95□□□□□ -1.78
HMGB3P20-201ENST00000417997 CTAGE15A4D2H0 777 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 TMEM110-MUSTN1A8MSY1 372 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 BTNL10A8MVZ5 291 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 DYNC1I1O14576 645 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CAND2O75155 1236 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PALMO75781 387 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 FTCDO95954 541 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZBED1O96006 694 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CD4P01730 458 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CTAGE8P0CG41 777 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 MYBL1P10243 752 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 GHRP10912 638 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 GZMAP12544 262 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PRF1P14222 555 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 TCP1P17987 556 aaKnown RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 BTF3P20290 206 aaKnown RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 RBL1P28749 1068 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PNPLA4P41247 253 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PAFAH1B1P43034 410 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ID2Q02363 134 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CFHR3Q02985 330 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 MGAT3Q09327 533 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SLC14A1Q13336 389 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 LAMB3Q13751 1172 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 GFOD2Q3B7J2 385 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 LIN9Q5TKA1 542 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 NAA35Q5VZE5 725 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CCDC70Q6NSX1 233 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 MZT2AQ6P582 158 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PEX26Q7Z412 305 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CTAGE6Q86UF2 777 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 KRT73Q86Y46 540 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 LIX1LQ8IVB5 337 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CTAGE4Q8IX94 777 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 C12orf76Q8N812 135 aaPredicted RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PNPLA1Q8N8W4 532 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 USP38Q8NB14 1042 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF564Q8TBZ8 553 aaPredicted RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZNF398Q8TD17 642 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 IPO4Q8TEX9 1081 aaKnown RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 HPDLQ96IR7 371 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CAPZA3Q96KX2 299 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SNX22Q96L94 193 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SIGLEC11Q96RL6 698 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 TSPAN18Q96SJ8 248 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 WACQ9BTA9 647 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SELENOOQ9BVL4 669 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 APOL5Q9BWW9 433 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ZCWPW1Q9H0M4 648 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 THAP2Q9H0W7 228 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SMYD3Q9H7B4 428 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SYNCQ9H7C4 482 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CYP3A43Q9HB55 503 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CISHQ9NSE2 258 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SLC38A7Q9NVC3 462 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 ARL8BQ9NVJ2 186 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 DKK4Q9UBT3 224 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CNOT8Q9UFF9 292 aaKnown RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 TUBGCP4Q9UGJ1 667 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 CDC23Q9UJX2 597 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 NOCTQ9UK39 431 aaKnown RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SNX12Q9UMY4 172 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 JRKLQ9Y4A0 524 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 HES2Q9Y543 173 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SNX9Q9Y5X1 595 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SAR1BQ9Y6B6 198 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SCINQ9Y6U3 715 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 V9GYY5 206 aaPredicted RBP3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 SCN1AP35498 2009 aa3.94□□□□□ -1.78
HMGB3P20-201ENST00000417997 PATJQ8NI35 1801 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 A8MVJ9 347 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 EFCAB8A8MWE9 144 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 H3BNC9 293 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 M0QYV0 167 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 DNM1LO00429 736 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 NCK2O43639 380 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 SPOPO43791 374 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 LSM8O95777 96 aaKnown RBP3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 CHRNA1P02708 482 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 MT-ND5P03915 603 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 CALB1P05937 261 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 PAEPP09466 180 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 WEE2P0C1S8 567 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 TMEM225BP0DP42 221 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 DESP17661 470 aa3.93□□□□□ -1.78
HMGB3P20-201ENST00000417997 CHRNB2P17787 502 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms