RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 HS3ST3A1Q9Y663 406 aa12.15□□□□□ -0.46
PTPRF-208ENST00000437607 A6NNZ2 444 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 CASC3O15234 703 aaKnown RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 INSIG1O15503 277 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 USP12O75317 370 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 PMPCBO75439 489 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 PAK4O96013 591 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 MT-CYBP00156 380 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 GP1BAP07359 652 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 MYBL2P10244 700 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 ADRB3P13945 408 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 ECHS1P30084 290 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 RGRP47804 291 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 LSSP48449 732 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 SKOR1P84550 965 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 RAD51Q06609 339 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 NIPAL4Q0D2K0 466 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 KYAT3Q6YP21 454 aaKnown RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 CENPUQ71F23 418 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 PTAR1Q7Z6K3 402 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 PDIK1LQ8N165 341 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 DNAAF3Q8N9W5 541 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 MCUQ8NE86 351 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 ZNF548Q8NEK5 533 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 IFI44Q8TCB0 444 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 SERPINB12Q96P63 405 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 DEPDC7Q96QD5 511 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 KLF6Q99612 283 aaPredicted RBP12.14□□□□□ -0.47
PTPRF-208ENST00000437607 ATP13A3Q9H7F0 1226 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 POLR1BQ9H9Y6 1135 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 DYRK4Q9NR20 520 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 DNAJC28Q9NX36 388 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 SSUH2Q9Y2M2 353 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 FADS3Q9Y5Q0 445 aa12.14□□□□□ -0.47
PTPRF-208ENST00000437607 ZFC3H1O60293 1989 aaKnown RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SPTY2D1-AS1A0A0U1RR47 76 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 TCRBV7S3A2A0A539 114 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ERVH48-1M5A8F1 160 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 AP3B1O00203 1094 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 DYNC1I1O14576 645 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SPINT1O43278 529 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 PPFIA2O75334 1257 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SUN1O94901 812 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CSF2P04141 144 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ALPPL2P10696 532 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 NME1P15531 152 aaKnown RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CR2P20023 1033 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ITGB7P26010 798 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SERPINA4P29622 427 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CSNK1DP48730 415 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CCNHP51946 323 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 NEK3P51956 506 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 WNT3AP56704 352 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CFHR1Q03591 330 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CCDC15Q0P6D6 951 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 GRM3Q14832 879 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 CFAP58Q5T655 872 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 KCTD11Q693B1 232 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 KIAA1161Q6NSJ0 714 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 KDELC1Q6UW63 502 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 PARS2Q7L3T8 475 aaKnown RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ZNF605Q86T29 641 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SRLQ86TD4 932 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 KLHDC8BQ8IXV7 354 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 OR6K2Q8NGY2 324 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ARRDC2Q8TBH0 407 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 AENQ8WTP8 325 aaKnown RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 PRR11Q96HE9 360 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 FEM1CQ96JP0 617 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 TUBGCP5Q96RT8 1024 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 SEMA4CQ9C0C4 833 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 ZDHHC6Q9H6R6 413 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 NOD2Q9HC29 1040 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 PNMA8BQ9ULN7 279 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-208ENST00000437607 MAST4O15021 2626 aa12.13□□□□□ -0.47
PTPRF-208ENST00000437607 PMS2P1A4D2B8 440 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 NEMP2A6NFY4 417 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 EIF3HO15372 352 aaKnown RBP eCLIP12.12□□□□□ -0.472e-7■□□□□ 8.5
PTPRF-208ENST00000437607 AP1G1O43747 822 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SOCS5O75159 536 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 CPP00450 1065 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 FGF1P05230 155 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 MMP2P08253 660 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 MLNP12872 115 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 HLA-DPA1P20036 260 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 ABL2P42684 1182 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 TMPRSS3P57727 454 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 ERVPABLB-1P60509 514 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 HNRNPKP61978 463 aaKnown RBP eCLIP12.12□□□□□ -0.472e-6■■■□□ 17.3
PTPRF-208ENST00000437607 RPS21P63220 83 aaKnown RBP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 BCL2L1Q07817 233 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 NSUN2Q08J23 767 aaKnown RBP eCLIP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 CDH17Q12864 832 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SPARCL1Q14515 664 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SLMAPQ14BN4 828 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 CDKN3Q16667 212 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 ISXQ2M1V0 245 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 BBS9Q3SYG4 887 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 CARD16Q5EG05 197 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms