RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CTRCQ99895 268 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 IDI2Q9BXS1 227 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 GMIPQ9P107 970 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 POLG2Q9UHN1 485 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 EIF3LQ9Y262 564 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 GPSM3Q9Y4H4 160 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PIK3C2AO00443 1686 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SNRPD2P62316 118 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 AGAP7PQ5VUJ5 663 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MAVSQ7Z434 540 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 CDYL2Q8N8U2 506 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 GMCL1P1Q8NEA9 526 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SPPL2AQ8TCT8 520 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MSANTD3Q96H12 275 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 RANBP9Q96S59 729 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 ACOX2Q99424 681 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MRPL45Q9BRJ2 306 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SEZ6LQ9BYH1 1024 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 DPY30Q9C005 99 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 DSN1Q9H410 356 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 NDFIP2Q9NV92 336 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PAK1IP1Q9NWT1 392 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PCDHGA7Q9Y5G6 932 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MYO18AQ92614 2054 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 NWD2Q9ULI1 1742 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 TCAF2A6NFQ2 919 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PMM2O15305 246 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MSI1O43347 362 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 EDIL3O43854 480 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 NMBRP28336 390 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TAS2R39P59534 338 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 RFTN1Q14699 578 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TYW3Q6IPR3 259 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 DCP2Q8IU60 420 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 CNIH3Q8TBE1 160 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TMCO6Q96DC7 493 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 VAT1Q99536 393 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 KRT84Q9NSB2 600 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MKS1Q9NXB0 559 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MAT2BQ9NZL9 334 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 FAM50BQ9Y247 325 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SAMHD1Q9Y3Z3 626 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TESMINQ9Y4I5 508 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MFSD11O43934 449 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ALDH3A2P51648 485 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TGFB2P61812 414 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SCN1BQ07699 218 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF252P-AS1Q0IIN9 211 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ZSWIM7Q19AV6 140 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 RFX4Q33E94 735 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 IL27RAQ6UWB1 636 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 HHIPL2Q6UWX4 724 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TMPRSS11AQ6ZMR5 421 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 COLGALT2Q8IYK4 626 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 NIPA2Q8N8Q9 360 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TWIST2Q8WVJ9 160 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 FEM1CQ96JP0 617 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SLC45A3Q96JT2 553 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PDCD2LQ9BRP1 358 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SPRTNQ9H040 489 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 REEP1Q9H902 201 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SP110Q9HB58 689 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 DIABLOQ9NR28 239 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TAS2R9Q9NYW1 312 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ZMYM5Q9UJ78 669 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TBC1D30Q9Y2I9 924 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 FMN2Q9NZ56 1722 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 SDHDO14521 159 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PIP5K1BO14986 540 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 IL18RAPO95256 599 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PGK2P07205 417 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 CACNB2Q08289 660 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 KCNAB2Q13303 367 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 E2F2Q14209 437 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 LAPTM4AQ15012 233 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 OXA1LQ15070 435 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MAPKAPK3Q16644 382 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 HSDL1Q3SXM5 330 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 INO80DQ53TQ3 878 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ELMOD1Q8N336 334 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PIK3C3Q8NEB9 887 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MYDGFQ969H8 173 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 BIRC7Q96CA5 298 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 NARS2Q96I59 477 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 B3GALT6Q96L58 329 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 TRNT1Q96Q11 434 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 APOL5Q9BWW9 433 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ATP13A3Q9H7F0 1226 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 OLA1Q9NTK5 396 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 GMPR2Q9P2T1 348 aaKnown RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 EMCNQ9ULC0 261 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 AKAP12Q02952 1782 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 LOC100130705A0A1B0GUX0 176 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 CHRNA1P02708 482 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 ICAM1P05362 532 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 CCNYL3P0C7X3 344 aa9.28□□□□□ -0.92
COL28A1-201ENST00000399429 MXD4Q14582 209 aaPredicted RBP9.28□□□□□ -0.92
COL28A1-201ENST00000399429 PLEKHG6Q3KR16 790 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms