RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 KCTD15Q96SI1 283 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 CARD9Q9H257 536 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 PCDH18Q9HCL0 1135 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 GGT7Q9UJ14 662 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 SNX12Q9UMY4 172 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 NEU3Q9UQ49 428 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 RNF215Q9Y6U7 377 aa13.99□□□□□ -0.17
SHKBP1-218ENST00000598907 IGLV3-10A0A075B6K4 115 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FAM72CH0Y354 149 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CES2O00748 559 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 NKX2-8O15522 239 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 ZRANB2O95218 330 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CD48P09326 243 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 PYGMP11217 842 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CCL4P13236 92 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CASQ1P31415 396 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 HCAR3P49019 387 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 ZNF135P52742 658 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 COPS2P61201 443 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 SLC12A1Q13621 1099 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 DPYSL3Q14195 570 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 C16orf72Q14CZ0 275 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 MAP9Q49MG5 647 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FAM72AQ5TYM5 149 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FAM72DQ6L9T8 149 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CXorf57Q6NSI4 855 aaKnown RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 KIAA1161Q6NSJ0 714 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 MAMDC2Q7Z304 686 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 HEATR4Q86WZ0 1026 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FAM72BQ86X60 149 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 SH2D3CQ8N5H7 860 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 EFCAB3Q8N7B9 438 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 TEX19Q8NA77 164 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 TMEM159Q96B96 161 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FAF2Q96CS3 445 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 CATSPER2Q96P56 530 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 DHX35Q9H5Z1 703 aaKnown RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 RCOR3Q9P2K3 495 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 OR12D3Q9UGF7 316 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 VPS28Q9UK41 221 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 GPR34Q9UPC5 381 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 FARP1Q9Y4F1 1045 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 SNX10Q9Y5X0 201 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 POLQO75417 2590 aa13.98□□□□□ -0.17
SHKBP1-218ENST00000598907 DRGXA6NNA5 263 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 F5H5T6 163 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 K7ERQ8 282 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 KRT1P04264 644 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 SRCP12931 536 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 HTR7P34969 479 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 PTPN7P35236 360 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 GJC1P36383 396 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CDKN2BP42772 138 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 NEK3P51956 506 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CDH6P55285 790 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 ZFP36L1Q07352 338 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 SGCGQ13326 291 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 AUHQ13825 339 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 DEFB109BQ30KR1 87 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 MFSD7Q6UXD7 560 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 MAP7D3Q8IWC1 876 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CACNA2D3Q8IZS8 1091 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 KCTD6Q8NC69 237 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 OR52K2Q8NGK3 314 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 OR2A12Q8NGT7 310 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 RNF25Q96BH1 459 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 RBM41Q96IZ5 413 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 PBKQ96KB5 322 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CCDC114Q96M63 670 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 OSBPL9Q96SU4 736 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 KLF6Q99612 283 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 ZNF670Q9BS34 389 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 TNKS2Q9H2K2 1166 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 SEMA6CQ9H3T2 930 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CASS4Q9NQ75 786 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CWC15Q9P013 229 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 PPARGC1AQ9UBK2 798 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 EFR3BQ9Y2G0 817 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 OTOGQ6ZRI0 2925 aa13.97□□□□□ -0.17
SHKBP1-218ENST00000598907 CHD5Q8TDI0 1954 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 LRRD1A4D1F6 860 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 TCAF2A6NFQ2 919 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 IGLON5A6NGN9 336 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 EFCAB7A8K855 629 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 K7EM74 188 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 LRIG2O94898 1065 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 CLDN1O95832 211 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 MT-CO1P00395 513 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 PRNPP04156 253 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 ADRB3P13945 408 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 TCP1P17987 556 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 UGT1A3P35503 534 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 GGCXP38435 758 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 ARSDP51689 593 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 PFN3P60673 137 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 CDC20Q12834 499 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 DPYSQ14117 519 aa13.96□□□□□ -0.17
SHKBP1-218ENST00000598907 KRT81Q14533 505 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms