RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 COX4I2Q96KJ9 171 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 ANKRD60Q9BZ19 345 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 RHOJQ9H4E5 214 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 KIAA1257Q9ULG3 409 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 DGKBQ9Y6T7 804 aa18.46■□□□□ 0.55
UPF1-210ENST00000600689 PDHXO00330 501 aa18.46■□□□□ 0.54
UPF1-210ENST00000600689 NCCRP1Q6ZVX7 275 aaPredicted RBP18.46■□□□□ 0.54
UPF1-210ENST00000600689 CUZD1Q86UP6 607 aa18.46■□□□□ 0.54
UPF1-210ENST00000600689 CROCCP3Q8IVE0 287 aa18.46■□□□□ 0.54
UPF1-210ENST00000600689 NPLQ9BXD5 320 aaPredicted RBP18.46■□□□□ 0.54
UPF1-210ENST00000600689 SIK2Q9H0K1 926 aa18.46■□□□□ 0.54
UPF1-210ENST00000600689 FAM49AQ9H0Q0 323 aaPredicted RBP18.46■□□□□ 0.54
UPF1-210ENST00000600689 BPTFQ12830 3046 aa18.46■□□□□ 0.54
UPF1-210ENST00000600689 SCN1AP35498 2009 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 FUOMA2VDF0 154 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 PPP6CO00743 305 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 RAB10P61026 200 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 PHEXP78562 749 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 MERTKQ12866 999 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 ZNF792Q3KQV3 632 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 HABP4Q5JVS0 413 aaKnown RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 RWDD4Q6NW29 188 aaKnown RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 ARHGAP36Q6ZRI8 547 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 USP50Q70EL3 339 aaPredicted RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 RETREG3Q86VR2 466 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 CENPIQ92674 756 aaPredicted RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 C16orf70Q9BSU1 422 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 YIPF2Q9BWQ6 316 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 SQORQ9Y6N5 450 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 I6L893 689 aaPredicted RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 TRIM24O15164 1050 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 CHRNA4P43681 627 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 CBLBQ13191 982 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 NR1D2Q14995 579 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 HERC3Q15034 1050 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 EGFLAMQ63HQ2 1017 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 GALNT18Q6P9A2 607 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 OR2T34Q8NGX1 318 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 OR2T3Q8NH03 318 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 DNAJB14Q8TBM8 379 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 BIRC8Q96P09 236 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 MED10Q9BTT4 135 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 MRPL46Q9H2W6 279 aaKnown RBP18.45■□□□□ 0.54
UPF1-210ENST00000600689 SNX25Q9H3E2 840 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 LRRC4Q9HBW1 653 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 CASS4Q9NQ75 786 aa18.45■□□□□ 0.54
UPF1-210ENST00000600689 SLCO1B7G3V0H7 640 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SLC4A1P02730 911 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 APOA4P06727 396 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 APLP1P51693 650 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 BMXP51813 675 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 BCAT1P54687 386 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 TNFAIP2Q03169 654 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 RFTN1Q14699 578 aaPredicted RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 CYP2A13Q16696 494 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 PERM1Q5SV97 790 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SIX6OS1Q8N1H7 587 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 PARP8Q8N3A8 854 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 ANKRD52Q8NB46 1076 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 VPS50Q96JG6 964 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 C3orf30Q96M34 536 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 GPATCH1Q9BRR8 931 aaKnown RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 C11orf84Q9BUA3 381 aaPredicted RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 HIPK3Q9H422 1215 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 ZFYVE28Q9HCC9 887 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 CITO14578 2027 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 DHRS12A0PJE2 317 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SNAI1O95863 264 aaPredicted RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 HSPA8P11142 646 aaKnown RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 CYP2B6P20813 491 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SLC1A2P43004 574 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 PLIN5Q00G26 463 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SLC25A52Q3SY17 297 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SAMD4BQ5PRF9 694 aaKnown RBP18.44■□□□□ 0.54
UPF1-210ENST00000600689 TBC1D15Q8TC07 691 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 SGCDQ92629 289 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 UPF1Q92900 1129 aaKnown RBP eCLIP18.44■□□□□ 0.541e-10■■■■■ 36.9
UPF1-210ENST00000600689 FADS3Q9Y5Q0 445 aa18.44■□□□□ 0.54
UPF1-210ENST00000600689 H3BRB1 525 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ELK4P28324 431 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 SNX16P57768 344 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 BFSP2Q13515 415 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 CYP51A1Q16850 503 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ZNF484Q5JVG2 852 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 LDLRAD1Q5T700 205 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 UTS2BQ765I0 119 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 CMTR2Q8IYT2 770 aaKnown RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 SLC15A4Q8N697 577 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 LINC01465Q8N7H1 131 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 ISL2Q96A47 359 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 FICDQ9BVA6 458 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 USP22Q9UPT9 525 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 PLXNA1Q9UIW2 1896 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 TCRBV3S1A0A5B6 114 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 LRRC14BA6NHZ5 514 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 NME4O00746 187 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 NOL3O60936 208 aaKnown RBP18.43■□□□□ 0.54
UPF1-210ENST00000600689 BMP10O95393 424 aa18.43■□□□□ 0.54
UPF1-210ENST00000600689 SNAP29O95721 258 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms