RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CHODLQ9H9P2 273 aa4.53□□□□□ -1.68
VPS13C-208ENST00000559119 ABCF3Q9NUQ8 709 aa4.53□□□□□ -1.68
VPS13C-208ENST00000559119 POU2F3Q9UKI9 436 aa4.53□□□□□ -1.68
VPS13C-208ENST00000559119 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-208ENST00000559119 A0A1W2PS18 150 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 NDUFB4O95168 129 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 ZNF8P17098 575 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-208ENST00000559119 BRWD1-AS2P59051 145 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 FCN2Q15485 313 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 TIGD6Q17RP2 521 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 EDRF1Q3B7T1 1238 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 CBWD5Q5RIA9 395 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 PRSS45Q7RTY3 260 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 METTL27Q8N6F8 245 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-208ENST00000559119 GRAPLQ8TC17 118 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-208ENST00000559119 ERGIC1Q969X5 290 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 LTV1Q96GA3 475 aaPredicted RBP4.52□□□□□ -1.69
VPS13C-208ENST00000559119 ZNF696Q9H7X3 374 aa4.52□□□□□ -1.69
VPS13C-208ENST00000559119 NDUFS7O75251 213 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 RFPL2O75678 378 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 SRD5A1P18405 259 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 TIMP3P35625 211 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 AARSP49588 968 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS13C-208ENST00000559119 FOXO1Q12778 655 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 BLMHQ13867 455 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 ESCO2Q56NI9 601 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 PPP6R3Q5H9R7 873 aaPredicted RBP4.51□□□□□ -1.69
VPS13C-208ENST00000559119 KRBA2Q6ZNG9 492 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 DGLUCYQ7Z3D6 616 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 PARP16Q8N5Y8 322 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 GFRA4Q9GZZ7 299 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 SAYSD1Q9NPB0 183 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 DDX43Q9NXZ2 648 aaKnown RBP4.51□□□□□ -1.69
VPS13C-208ENST00000559119 SRP68Q9UHB9 627 aaKnown RBP4.51□□□□□ -1.69
VPS13C-208ENST00000559119 SUFUQ9UMX1 484 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 PCDHGB5Q9Y5G0 923 aa4.51□□□□□ -1.69
VPS13C-208ENST00000559119 SERINC4A6NH21 518 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 SOCS6O14544 535 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 PRSS1P07477 247 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 CHRM4P08173 479 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 GPTP24298 496 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 HNRNPH1P31943 449 aaKnown RBP4.5□□□□□ -1.69
VPS13C-208ENST00000559119 FMO5P49326 533 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 CUL4BQ13620 913 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 NEDD9Q14511 834 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 EFNB3Q15768 340 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 SOWAHAQ2M3V2 549 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 PAPPA-AS1Q5QFB9 102 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 ZNF772Q68DY9 489 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-208ENST00000559119 CCSAPQ6IQ19 270 aaPredicted RBP4.5□□□□□ -1.69
VPS13C-208ENST00000559119 DENND1BQ6P3S1 775 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 WDR73Q6P4I2 378 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 CACNA2D3Q8IZS8 1091 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 SPEM1Q8N4L4 309 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 SPATA22Q8NHS9 363 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 TAAR2Q9P1P5 351 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 PSAT1Q9Y617 370 aa4.5□□□□□ -1.69
VPS13C-208ENST00000559119 A0A1B0GU03 582 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 ARHGAP10A1A4S6 786 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 ASPDHA6ND91 283 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 CAPN9O14815 690 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 PCNAP12004 261 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 FGF5P12034 268 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 CD58P19256 250 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 SERPINB3P29508 390 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 RYKP34925 604 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 LINC01547P58512 204 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 PMP22Q01453 160 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 RELQ04864 619 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 SLC20A2Q08357 652 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 ITGADQ13349 1161 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 CCDC38Q502W7 563 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 FAM83BQ5T0W9 1011 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 TOGARAM2Q6ZUX3 1019 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 DSG4Q86SJ6 1040 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 MYPOPQ86VE0 399 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 MYLK4Q86YV6 388 aaPredicted RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 GJC3Q8NFK1 279 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 SH3KBP1Q96B97 665 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 SDCCAG3Q96C92 435 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 ZC3HAV1LQ96H79 300 aaKnown RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 KXD1Q9BQD3 176 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 RBM4Q9BWF3 364 aaKnown RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 BARHL1Q9BZE3 327 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 CISD1Q9NZ45 108 aaKnown RBP4.49□□□□□ -1.69
VPS13C-208ENST00000559119 DERAQ9Y315 318 aa4.49□□□□□ -1.69
VPS13C-208ENST00000559119 ADGRF5Q8IZF2 1346 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 IGKV3D-15A0A087WSY6 115 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 ABHD14A-ACY1A0A1B0GW23 586 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 LILRA5A6NI73 299 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 KLRF2D3W0D1 207 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 STX16-NPEPL1H3BU86 382 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 STX16O14662 325 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 PLRG1O43660 514 aaKnown RBP4.48□□□□□ -1.69
VPS13C-208ENST00000559119 DHX16O60231 1041 aaKnown RBP4.48□□□□□ -1.69
VPS13C-208ENST00000559119 ZNF883P0CG24 379 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 CDH1P12830 882 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 CHATP28329 748 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 SREBF2Q12772 1141 aa4.48□□□□□ -1.69
VPS13C-208ENST00000559119 TBC1D26Q86UD7 250 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms