RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CHCHD4Q8N4Q1 142 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 OR52L1Q8NGH7 329 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 C15orf40Q8WUR7 153 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 RXFP2Q8WXD0 754 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 OR8D1Q8WZ84 308 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 MYLPFQ96A32 169 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 DEPDC7Q96QD5 511 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 REEP1Q9H902 201 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CLK4Q9HAZ1 481 aaKnown RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 NUDT4Q9NZJ9 180 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PCDHGB3Q9Y5G1 929 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ZFP37Q9Y6Q3 630 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 LOC110117498-PIK3R3F6TDL0 507 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 FSCN2O14926 492 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PRKAR1AP10644 381 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 S100GP29377 79 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PDGFRLQ15198 375 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CRY1Q16526 586 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 SNX30Q5VWJ9 437 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 TSHZ1Q6ZSZ6 1077 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PIWIL4Q7Z3Z4 852 aaKnown RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ZDHHC13Q8IUH4 622 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PIK3R3Q92569 461 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CRTAC1Q9NQ79 661 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 WBP11Q9Y2W2 641 aaKnown RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PIPSLA2A3N6 862 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 GCATO75600 419 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 OTCP00480 354 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PIM1P11309 404 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 DDX6P26196 483 aaKnown RBP eCLIP7.86□□□□□ -1.151e-8■□□□□ 11.1
VPS13D-211ENST00000543710 CSTF1Q05048 431 aaKnown RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 VAC14Q08AM6 782 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 MFSD7Q6UXD7 560 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 FGD2Q7Z6J4 655 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 LRRC52Q8N7C0 313 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 AMER2Q8N7J2 671 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CNTD1Q8N815 330 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 RFWD2Q8NHY2 731 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 SYT15Q9BQS2 421 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ATXN10Q9UBB4 475 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 COL1A1P02452 1464 aaPredicted RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CLOCKO15516 846 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 SEMA3DO95025 777 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF286BP0CG31 522 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ATP6V1B2P21281 511 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 SCNN1AP37088 669 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ADARP55265 1226 aaKnown RBP7.86□□□□□ -1.15
VPS13D-211ENST00000543710 FOXM1Q08050 763 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 IRF5Q13568 498 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 NR1D2Q14995 579 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 MILR1Q7Z6M3 343 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF554Q86TJ5 538 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CAMKK1Q8N5S9 505 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 TTPALQ9BTX7 342 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 NEUROD4Q9HD90 331 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 HCN3Q9P1Z3 774 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PCDHGC3Q9UN70 934 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 PIK3C2AO00443 1686 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DCXO43602 365 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 NPHS1O60500 1241 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MAFO75444 373 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ANPEPP15144 967 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 NR4A1P22736 598 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PCSK7Q16549 785 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 EIF3MQ7L2H7 374 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DGLUCYQ7Z3D6 616 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ACOT1Q86TX2 421 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ARHGEF19Q8IW93 802 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TCP10LQ8TDR4 215 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CAPSLQ8WWF8 208 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PRCCQ92733 491 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DUSP9Q99956 384 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ADI1Q9BV57 179 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 GPN1Q9HCN4 374 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 MIEF1Q9NQG6 463 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SPASTQ9UBP0 616 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 UBIAD1Q9Y5Z9 338 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 UBE2QL1A1L167 161 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 BCLAF3A2AJT9 711 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 WDR27A2RRH5 827 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 NFIBO00712 420 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ALOX15BO15296 676 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SNX3O60493 162 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 USP2O75604 605 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 FGFR1P11362 822 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DRD4P21917 467 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 HNMTP50135 292 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 CRYBB1P53674 252 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 RAB10P61026 200 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 TWF1Q12792 350 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 SLC47A2Q86VL8 602 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 IPCEF1Q8WWN9 437 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 HAVCR1Q96D42 359 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 FUBP3Q96I24 572 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 REXO5Q96IC2 774 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 PURBQ96QR8 312 aaKnown RBP7.85□□□□□ -1.15
VPS13D-211ENST00000543710 OSMRQ99650 979 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 KCTD10Q9H3F6 313 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 DNAJC18Q9H819 358 aa7.85□□□□□ -1.15
VPS13D-211ENST00000543710 ST3GAL5Q9UNP4 418 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms