RNA–Protein interactions for RNA: YOR106W

VAM3, Transcript of Syntaxin-like vacuolar t-SNARE, yeastyeast

Gene VAM3, Length 852 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM3YOR106W NCE103P53615 221 aa7.6□□□□□ -1.19
VAM3YOR106W YOR223WQ12015 292 aa7.6□□□□□ -1.19
VAM3YOR106W SAF1P38352 637 aa7.59□□□□□ -1.19
VAM3YOR106W SHU2P38957 223 aa7.59□□□□□ -1.19
VAM3YOR106W KAR2P16474 682 aaKnown RBP7.58□□□□□ -1.2
VAM3YOR106W PRP40P33203 583 aaKnown RBP7.58□□□□□ -1.2
VAM3YOR106W DAL4Q04895 635 aa7.58□□□□□ -1.2
VAM3YOR106W NOP8Q08287 484 aaPredicted RBP7.58□□□□□ -1.2
VAM3YOR106W RPT1P33299 467 aaKnown RBP7.57□□□□□ -1.2
VAM3YOR106W YKL077WP36081 392 aa7.57□□□□□ -1.2
VAM3YOR106W KAE1P36132 386 aa7.57□□□□□ -1.2
VAM3YOR106W MEC3Q02574 474 aa7.57□□□□□ -1.2
VAM3YOR106W NAM7P30771 971 aaKnown RBP7.56□□□□□ -1.2
VAM3YOR106W CHS2P14180 963 aa7.55□□□□□ -1.2
VAM3YOR106W DOT1Q04089 582 aaKnown RBP7.55□□□□□ -1.2
VAM3YOR106W PUF3Q07807 879 aaKnown RBP RIP-Chip data7.55□□□□□ -1.2not detected
VAM3YOR106W YLR122CQ12312 125 aa7.55□□□□□ -1.2
VAM3YOR106W REI1P38344 393 aaPredicted RBP7.54□□□□□ -1.2
VAM3YOR106W RSM26P47141 266 aa7.54□□□□□ -1.2
VAM3YOR106W GIC2Q06648 383 aa7.54□□□□□ -1.2
VAM3YOR106W SQT1P35184 431 aa7.53□□□□□ -1.2
VAM3YOR106W MGE1P38523 228 aa7.53□□□□□ -1.2
VAM3YOR106W TY1A-LR4P0C2I8 440 aaKnown RBP7.52□□□□□ -1.21
VAM3YOR106W TY1A-DR6P0CX70 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-ER1P0CX71 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-LR2P0CX72 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-PLP0CX73 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-JR1P0CX74 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-LR3P0CX75 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-ML2P0CX76 440 aa7.52□□□□□ -1.21
VAM3YOR106W POL32P47110 350 aa7.52□□□□□ -1.21
VAM3YOR106W ALG6Q12001 544 aaKnown RBP7.52□□□□□ -1.21
VAM3YOR106W TY1A-GR1Q12085 440 aa7.52□□□□□ -1.21
VAM3YOR106W TY1A-PR3Q6Q5H1 440 aaKnown RBP7.52□□□□□ -1.21
VAM3YOR106W TY1A-OLQ92392 440 aaKnown RBP7.52□□□□□ -1.21
VAM3YOR106W HEM3P28789 327 aa7.51□□□□□ -1.21
VAM3YOR106W UGA4P32837 571 aa7.51□□□□□ -1.21
VAM3YOR106W GPT2P36148 743 aa7.51□□□□□ -1.21
VAM3YOR106W ARL1P38116 183 aaKnown RBP7.51□□□□□ -1.21
VAM3YOR106W EXO5P38289 585 aa7.51□□□□□ -1.21
VAM3YOR106W PEX13P80667 386 aa7.51□□□□□ -1.21
VAM3YOR106W ULP1Q02724 621 aa7.51□□□□□ -1.21
VAM3YOR106W NOG1Q02892 647 aaKnown RBP7.51□□□□□ -1.21
VAM3YOR106W ALO1P54783 526 aaKnown RBP7.5□□□□□ -1.21
VAM3YOR106W AVO1Q08236 1176 aa7.5□□□□□ -1.21
VAM3YOR106W MSH3P25336 1018 aa7.49□□□□□ -1.21
VAM3YOR106W MAC1P35192 417 aa7.49□□□□□ -1.21
VAM3YOR106W MTR4P47047 1073 aaKnown RBP7.49□□□□□ -1.21
VAM3YOR106W YGR130CP53278 816 aa7.49□□□□□ -1.21
VAM3YOR106W MED7Q08278 222 aa7.49□□□□□ -1.21
VAM3YOR106W FAA3P39002 694 aa7.48□□□□□ -1.21
VAM3YOR106W TOS4Q06266 489 aa7.48□□□□□ -1.21
VAM3YOR106W MSB1P21339 1137 aaKnown RBP7.47□□□□□ -1.21
VAM3YOR106W OMA1P36163 345 aa7.47□□□□□ -1.21
VAM3YOR106W MMM1P41800 426 aa7.47□□□□□ -1.21
VAM3YOR106W ADI1Q03677 179 aa7.47□□□□□ -1.21
VAM3YOR106W HXK1P04806 485 aaKnown RBP7.46□□□□□ -1.22
VAM3YOR106W ASF1P32447 279 aa7.46□□□□□ -1.22
VAM3YOR106W ATG14P38270 344 aa7.46□□□□□ -1.22
VAM3YOR106W PEX28P38848 579 aa7.46□□□□□ -1.22
VAM3YOR106W SLS1P42900 643 aa7.46□□□□□ -1.22
VAM3YOR106W YGR122WP53272 402 aa7.46□□□□□ -1.22
VAM3YOR106W YPL109CQ02981 657 aa7.46□□□□□ -1.22
VAM3YOR106W TRP3P00937 484 aa7.45□□□□□ -1.22
VAM3YOR106W NEM1P38757 446 aa7.45□□□□□ -1.22
VAM3YOR106W SPO74P45819 413 aa7.45□□□□□ -1.22
VAM3YOR106W ELA1P53861 379 aaPredicted RBP7.45□□□□□ -1.22
VAM3YOR106W CYC7P00045 113 aa7.44□□□□□ -1.22
VAM3YOR106W ATE1P16639 503 aa7.44□□□□□ -1.22
VAM3YOR106W VMA4P22203 233 aaKnown RBP7.44□□□□□ -1.22
VAM3YOR106W YKR073CP36153 106 aa7.44□□□□□ -1.22
VAM3YOR106W MSH4P40965 878 aaPredicted RBP7.44□□□□□ -1.22
VAM3YOR106W CIT3P43635 486 aa7.44□□□□□ -1.22
VAM3YOR106W YGR045CP53229 120 aa7.44□□□□□ -1.22
VAM3YOR106W NSI1Q12457 570 aa7.44□□□□□ -1.22
VAM3YOR106W WHI3P34761 661 aaKnown RBP7.43□□□□□ -1.22
VAM3YOR106W TOS1P38288 455 aa7.43□□□□□ -1.22
VAM3YOR106W MRPS18P42847 217 aa7.43□□□□□ -1.22
VAM3YOR106W MCD1Q12158 566 aa7.43□□□□□ -1.22
VAM3YOR106W RPS4AP0CX35 261 aaKnown RBP7.42□□□□□ -1.22
VAM3YOR106W RPS4BP0CX36 261 aaKnown RBP7.42□□□□□ -1.22
VAM3YOR106W NFS1P25374 497 aa7.42□□□□□ -1.22
VAM3YOR106W SMY2P32909 740 aaKnown RBP7.42□□□□□ -1.22
VAM3YOR106W NNK1P36003 928 aa7.42□□□□□ -1.22
VAM3YOR106W YAR028WP39548 234 aa7.42□□□□□ -1.22
VAM3YOR106W XKS1P42826 600 aa7.42□□□□□ -1.22
VAM3YOR106W UTP5Q04177 643 aaKnown RBP7.42□□□□□ -1.22
VAM3YOR106W YOR059CQ08448 450 aaKnown RBP7.42□□□□□ -1.22
VAM3YOR106W SCP160P06105 1222 aaKnown RBP RIP-Chip data7.41□□□□□ -1.22not detected
VAM3YOR106W LIP5P32875 414 aa7.41□□□□□ -1.22
VAM3YOR106W RPS26AP39938 119 aaKnown RBP7.41□□□□□ -1.22
VAM3YOR106W RPS26BP39939 119 aaKnown RBP7.41□□□□□ -1.22
VAM3YOR106W INP52P50942 1183 aa7.41□□□□□ -1.22
VAM3YOR106W NRD1P53617 575 aaKnown RBP RIP-Chip data7.41□□□□□ -1.22not detected
VAM3YOR106W LAP2Q10740 671 aa7.41□□□□□ -1.22
VAM3YOR106W PRE9P23638 258 aaKnown RBP7.4□□□□□ -1.22
VAM3YOR106W HSE1P38753 452 aa7.4□□□□□ -1.22
VAM3YOR106W YJR107WP47145 328 aa7.4□□□□□ -1.22
VAM3YOR106W ALT1P52893 592 aa7.4□□□□□ -1.22
VAM3YOR106W YGL140CP53120 1219 aa7.4□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 54.5 ms