RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeast

Gene SHH4, Length 507 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH4	YLR164W	AAD16	Q02895	342 aa		11.5	□□□□□ -0.57
SHH4	YLR164W	CDC6	P09119	513 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	KRS1	P15180	591 aa	Known RBP	11.49	□□□□□ -0.57
SHH4	YLR164W	RDS1	P25611	832 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	MAL33	P38157	468 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	CST26	P38226	397 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	RFC5	P38251	354 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	BUD6	P41697	788 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	UBP10	P53874	792 aa	Predicted RBP	11.49	□□□□□ -0.57
SHH4	YLR164W	LAP2	Q10740	671 aa		11.49	□□□□□ -0.57
SHH4	YLR164W	DIT2	P21595	489 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	RNR3	P21672	869 aa	Known RBP	11.48	□□□□□ -0.57
SHH4	YLR164W	RPL8B	P29453	256 aa	Known RBP	11.48	□□□□□ -0.57
SHH4	YLR164W	BMH2	P34730	273 aa	Known RBP	11.48	□□□□□ -0.57
SHH4	YLR164W	VHR2	P40041	505 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	PCI8	P40512	444 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	CIR1	P42940	261 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	HST1	P53685	503 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	FOL1	P53848	824 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	VPS30	Q02948	557 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	SUE1	Q06524	206 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	TUS1	Q06412	1307 aa		11.48	□□□□□ -0.57
SHH4	YLR164W	HSP82	P02829	709 aa	Known RBP	11.47	□□□□□ -0.57
SHH4	YLR164W	MET6	P05694	767 aa	Known RBP	11.47	□□□□□ -0.57
SHH4	YLR164W	NUC1	P08466	329 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	ROX1	P25042	368 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	SIS2	P36024	562 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	TTI1	P36097	1038 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	MAL31	P38156	614 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	TIF4631	P39935	952 aa	Known RBP	11.47	□□□□□ -0.57
SHH4	YLR164W	PEA2	P40091	420 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	HAP5	Q02516	242 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	PEX19	Q07418	342 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	DCS2	Q12123	353 aa		11.47	□□□□□ -0.57
SHH4	YLR164W	STI1	P15705	589 aa	Known RBP RIP-Chip data	11.46	□□□□□ -0.57	not detected
SHH4	YLR164W	SSA4	P22202	642 aa	Known RBP	11.46	□□□□□ -0.57
SHH4	YLR164W	RXT2	P38255	430 aa		11.46	□□□□□ -0.57
SHH4	YLR164W	EAF7	P53911	425 aa	Known RBP	11.46	□□□□□ -0.57
SHH4	YLR164W	DSE3	Q08729	430 aa		11.46	□□□□□ -0.57
SHH4	YLR164W	FRS2	P15625	503 aa	Known RBP	11.45	□□□□□ -0.58
SHH4	YLR164W	CBP3	P21560	335 aa		11.45	□□□□□ -0.58
SHH4	YLR164W	SNF7	P39929	240 aa	Known RBP	11.45	□□□□□ -0.58
SHH4	YLR164W	ACA1	P39970	489 aa		11.45	□□□□□ -0.58
SHH4	YLR164W	PEX29	Q03370	554 aa		11.45	□□□□□ -0.58
SHH4	YLR164W	TPS3	P38426	1054 aa	Known RBP	11.44	□□□□□ -0.58
SHH4	YLR164W	UBP9	P39967	754 aa		11.44	□□□□□ -0.58
SHH4	YLR164W	HYR1	P40581	163 aa	Known RBP	11.44	□□□□□ -0.58
SHH4	YLR164W	ALG2	P43636	503 aa		11.44	□□□□□ -0.58
SHH4	YLR164W	SNU71	P53207	620 aa	Known RBP	11.44	□□□□□ -0.58
SHH4	YLR164W	MDM1	Q01846	1127 aa		11.44	□□□□□ -0.58
SHH4	YLR164W	YDR341C	Q05506	607 aa	Known RBP	11.44	□□□□□ -0.58
SHH4	YLR164W	YIL089W	P40500	205 aa		11.43	□□□□□ -0.58
SHH4	YLR164W	PEX14	P53112	341 aa		11.43	□□□□□ -0.58
SHH4	YLR164W	CWC15	Q03772	175 aa	Known RBP	11.43	□□□□□ -0.58
SHH4	YLR164W	GIS4	Q04233	774 aa		11.43	□□□□□ -0.58
SHH4	YLR164W	NDT80	P38830	627 aa		11.42	□□□□□ -0.58
SHH4	YLR164W	GET3	Q12154	354 aa	Known RBP	11.42	□□□□□ -0.58
SHH4	YLR164W	APC11	Q12157	165 aa		11.42	□□□□□ -0.58
SHH4	YLR164W	CIT1	P00890	479 aa		11.41	□□□□□ -0.58
SHH4	YLR164W	GAL2	P13181	574 aa		11.41	□□□□□ -0.58
SHH4	YLR164W	ASE1	P50275	885 aa		11.41	□□□□□ -0.58
SHH4	YLR164W	YGL138C	P53122	345 aa		11.41	□□□□□ -0.58
SHH4	YLR164W	PIL1	P53252	339 aa	Known RBP	11.41	□□□□□ -0.58
SHH4	YLR164W	GDE1	Q02979	1223 aa		11.41	□□□□□ -0.58
SHH4	YLR164W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.41	□□□□□ -0.58	not detected
SHH4	YLR164W	FBP1	P09201	348 aa		11.4	□□□□□ -0.58
SHH4	YLR164W	VPS45	P38932	577 aa		11.4	□□□□□ -0.58
SHH4	YLR164W	RVS167	P39743	482 aa	Known RBP	11.4	□□□□□ -0.58
SHH4	YLR164W	PEX21	P50091	288 aa		11.4	□□□□□ -0.58
SHH4	YLR164W	KEX1	P09620	729 aa		11.39	□□□□□ -0.59
SHH4	YLR164W	URA1	P28272	314 aa	Predicted RBP	11.39	□□□□□ -0.59
SHH4	YLR164W	ELM1	P32801	640 aa		11.39	□□□□□ -0.59
SHH4	YLR164W	TOM71	P38825	639 aa	Known RBP	11.39	□□□□□ -0.59
SHH4	YLR164W	KRE33	P53914	1056 aa	Known RBP	11.39	□□□□□ -0.59
SHH4	YLR164W	UTP4	Q06679	776 aa	Known RBP	11.39	□□□□□ -0.59
SHH4	YLR164W	GIN4	Q12263	1142 aa		11.39	□□□□□ -0.59
SHH4	YLR164W	PTC5	Q12511	572 aa		11.39	□□□□□ -0.59
SHH4	YLR164W	YDJ1	P25491	409 aa	Known RBP	11.38	□□□□□ -0.59
SHH4	YLR164W	MCM4	P30665	933 aa	Known RBP	11.38	□□□□□ -0.59
SHH4	YLR164W	KNS1	P32350	737 aa	Predicted RBP	11.38	□□□□□ -0.59
SHH4	YLR164W	DID4	P36108	232 aa		11.38	□□□□□ -0.59
SHH4	YLR164W	ARL1	P38116	183 aa	Known RBP	11.38	□□□□□ -0.59
SHH4	YLR164W	CLF1	Q12309	687 aa	Predicted RBP	11.38	□□□□□ -0.59
SHH4	YLR164W	MYO1	P08964	1928 aa		11.38	□□□□□ -0.59
SHH4	YLR164W	PGI1	P12709	554 aa	Known RBP	11.37	□□□□□ -0.59
SHH4	YLR164W	CCT5	P40413	562 aa	Known RBP	11.37	□□□□□ -0.59
SHH4	YLR164W	YML037C	Q03703	340 aa		11.37	□□□□□ -0.59
SHH4	YLR164W	SMD2	Q06217	110 aa	Known RBP	11.37	□□□□□ -0.59
SHH4	YLR164W	ERG12	P07277	443 aa		11.36	□□□□□ -0.59
SHH4	YLR164W	MAK11	P20484	414 aa	Known RBP	11.36	□□□□□ -0.59
SHH4	YLR164W	LYS14	P40971	790 aa		11.36	□□□□□ -0.59
SHH4	YLR164W	YJL007C	P47080	104 aa		11.36	□□□□□ -0.59
SHH4	YLR164W	RGP1	P16664	663 aa		11.35	□□□□□ -0.59
SHH4	YLR164W	PES4	P39684	611 aa		11.35	□□□□□ -0.59
SHH4	YLR164W	NAF1	P53919	492 aa	Known RBP	11.35	□□□□□ -0.59
SHH4	YLR164W	CSC1	Q06538	782 aa		11.35	□□□□□ -0.59
SHH4	YLR164W	HXK1	P04806	485 aa	Known RBP	11.34	□□□□□ -0.59
SHH4	YLR164W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	11.34	□□□□□ -0.59	not detected
SHH4	YLR164W	RPN12	P32496	274 aa		11.34	□□□□□ -0.59
SHH4	YLR164W	CCT3	P39077	534 aa	Known RBP	11.34	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 117.9 ms