RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W TDA6Q06466 467 aa5.38□□□□□ -1.55
PRE9YGR135W SSF2Q12153 453 aaPredicted RBP5.38□□□□□ -1.55
PRE9YGR135W MHP1P43638 1398 aa5.38□□□□□ -1.55
PRE9YGR135W RPB10P22139 70 aa5.37□□□□□ -1.55
PRE9YGR135W MSC7P38694 644 aa5.37□□□□□ -1.55
PRE9YGR135W HXT5P38695 592 aa5.37□□□□□ -1.55
PRE9YGR135W HEH2Q03281 663 aa5.37□□□□□ -1.55
PRE9YGR135W UBX5Q06682 500 aa5.37□□□□□ -1.55
PRE9YGR135W OXR1Q08952 273 aa5.37□□□□□ -1.55
PRE9YGR135W CFT1Q06632 1357 aaKnown RBP5.37□□□□□ -1.55
PRE9YGR135W TY2B-LR1P0C2J3 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-FP0CX63 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-GR2P0CX64 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-CP25384 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-DR2Q03494 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY1B-DR1Q03855 1755 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-DR3Q07791 1770 aaKnown RBP5.37□□□□□ -1.55
PRE9YGR135W TY2B-OR1Q12113 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-DR1Q12472 1770 aa5.37□□□□□ -1.55
PRE9YGR135W TY2B-OR2Q12501 1770 aa5.37□□□□□ -1.55
PRE9YGR135W VPS35P34110 944 aa5.36□□□□□ -1.55
PRE9YGR135W PBP2P38151 413 aaKnown RBP RIP-Chip data5.36□□□□□ -1.55not detected
PRE9YGR135W SAM37P50110 327 aa5.36□□□□□ -1.55
PRE9YGR135W SUT1P53032 299 aaKnown RBP5.36□□□□□ -1.55
PRE9YGR135W RPN4Q03465 531 aa5.36□□□□□ -1.55
PRE9YGR135W VTH1P40438 1549 aa5.36□□□□□ -1.55
PRE9YGR135W VTH2P40890 1549 aa5.36□□□□□ -1.55
PRE9YGR135W MCX1P38323 520 aaPredicted RBP5.35□□□□□ -1.55
PRE9YGR135W BOI2P39969 1040 aa5.35□□□□□ -1.55
PRE9YGR135W SKP1P52286 194 aa5.35□□□□□ -1.55
PRE9YGR135W SUB1P54000 292 aaKnown RBP5.35□□□□□ -1.55
PRE9YGR135W YMR187CQ03236 431 aa5.35□□□□□ -1.55
PRE9YGR135W CAT8P39113 1433 aa5.34□□□□□ -1.55
PRE9YGR135W KAP122P32767 1081 aa5.34□□□□□ -1.55
PRE9YGR135W MNR2P35724 969 aa5.34□□□□□ -1.55
PRE9YGR135W NCL1P38205 684 aaKnown RBP5.34□□□□□ -1.55
PRE9YGR135W CYC8P14922 966 aa5.33□□□□□ -1.56
PRE9YGR135W IME2P32581 645 aa5.33□□□□□ -1.56
PRE9YGR135W SKN7P38889 622 aa5.33□□□□□ -1.56
PRE9YGR135W CCT8P47079 568 aaKnown RBP5.33□□□□□ -1.56
PRE9YGR135W YGR122WP53272 402 aa5.33□□□□□ -1.56
PRE9YGR135W YNL011CP53980 444 aa5.33□□□□□ -1.56
PRE9YGR135W CUS1Q02554 436 aaPredicted RBP5.33□□□□□ -1.56
PRE9YGR135W BDF2Q07442 638 aa5.33□□□□□ -1.56
PRE9YGR135W APC11Q12157 165 aa5.33□□□□□ -1.56
PRE9YGR135W YGR161W-CQ3E744 92 aa5.33□□□□□ -1.56
PRE9YGR135W TY2B-BQ12491 1770 aa5.33□□□□□ -1.56
PRE9YGR135W PDR5P33302 1511 aaKnown RBP5.33□□□□□ -1.56
PRE9YGR135W YBT1P32386 1661 aa5.32□□□□□ -1.56
PRE9YGR135W ESC1Q03661 1658 aaKnown RBP5.32□□□□□ -1.56
PRE9YGR135W MET6P05694 767 aaKnown RBP5.32□□□□□ -1.56
PRE9YGR135W SSB1P11484 613 aaKnown RBP5.32□□□□□ -1.56
PRE9YGR135W RPC31P17890 251 aa5.32□□□□□ -1.56
PRE9YGR135W CIC1P38779 376 aaKnown RBP5.32□□□□□ -1.56
PRE9YGR135W MNN1P39106 762 aa5.32□□□□□ -1.56
PRE9YGR135W SSB2P40150 613 aaKnown RBP5.32□□□□□ -1.56
PRE9YGR135W CDC55Q00362 526 aa5.32□□□□□ -1.56
PRE9YGR135W CAB1Q04430 367 aa5.32□□□□□ -1.56
PRE9YGR135W IRC20Q06554 1556 aa5.31□□□□□ -1.56
PRE9YGR135W RAD2P07276 1031 aa5.31□□□□□ -1.56
PRE9YGR135W PRI2P20457 528 aa5.31□□□□□ -1.56
PRE9YGR135W GRX1P25373 110 aaKnown RBP5.31□□□□□ -1.56
PRE9YGR135W APM2P38700 605 aa5.31□□□□□ -1.56
PRE9YGR135W YHL008CP38750 627 aa5.31□□□□□ -1.56
PRE9YGR135W QDR2P40474 542 aa5.31□□□□□ -1.56
PRE9YGR135W HUL5P53119 910 aa5.31□□□□□ -1.56
PRE9YGR135W GDE1Q02979 1223 aa5.31□□□□□ -1.56
PRE9YGR135W NOC3Q07896 663 aaPredicted RBP5.31□□□□□ -1.56
PRE9YGR135W OPY1P38271 328 aa5.3□□□□□ -1.56
PRE9YGR135W BUD6P41697 788 aa5.3□□□□□ -1.56
PRE9YGR135W GEA2P39993 1459 aaKnown RBP5.3□□□□□ -1.56
PRE9YGR135W GDB1Q06625 1536 aa5.29□□□□□ -1.56
PRE9YGR135W CLC1P17891 233 aa5.29□□□□□ -1.56
PRE9YGR135W MRPL33P20084 86 aa5.29□□□□□ -1.56
PRE9YGR135W DYS1P38791 387 aa5.29□□□□□ -1.56
PRE9YGR135W NUP82P40368 713 aa5.29□□□□□ -1.56
PRE9YGR135W PRK1P40494 810 aa5.29□□□□□ -1.56
PRE9YGR135W TIM54P47045 478 aa5.29□□□□□ -1.56
PRE9YGR135W TDA5Q06417 326 aaKnown RBP5.29□□□□□ -1.56
PRE9YGR135W YDR215CQ12240 137 aa5.29□□□□□ -1.56
PRE9YGR135W GCN2P15442 1659 aa5.28□□□□□ -1.56
PRE9YGR135W RAD4P14736 754 aa5.28□□□□□ -1.56
PRE9YGR135W SMC1P32908 1225 aa5.28□□□□□ -1.56
PRE9YGR135W FAA3P39002 694 aa5.28□□□□□ -1.56
PRE9YGR135W MRPS18P42847 217 aa5.28□□□□□ -1.56
PRE9YGR135W YJR142WP47173 342 aa5.28□□□□□ -1.56
PRE9YGR135W VPS72Q03388 795 aa5.28□□□□□ -1.56
PRE9YGR135W DAL4Q04895 635 aa5.28□□□□□ -1.56
PRE9YGR135W BSC2Q05611 235 aa5.28□□□□□ -1.56
PRE9YGR135W NHA1Q99271 985 aa5.28□□□□□ -1.56
PRE9YGR135W TY1B-HO13535 1793 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-DR5P0C2I2 1755 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-DR6P0C2I3 1755 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-LR2P0C2I5 1755 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-LR3P0C2I6 1755 aaKnown RBP5.27□□□□□ -1.57
PRE9YGR135W TY1B-PR1P0C2I9 1755 aaKnown RBP5.27□□□□□ -1.57
PRE9YGR135W TY1B-PR2P0C2J0 1756 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-PR3P0C2J1 1755 aaKnown RBP5.27□□□□□ -1.57
PRE9YGR135W TY1B-JR1P47098 1755 aa5.27□□□□□ -1.57
PRE9YGR135W TY1B-ML2Q03434 1755 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms