RNA–Protein interactions for RNA: YDL053C

PBP4, Transcript of Pbp1p binding protein, yeast

Gene PBP4, Length 558 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PBP4	YDL053C	TY1A-LR4	P0C2I8	440 aa	Known RBP	5	□□□□□ -1.61
PBP4	YDL053C	TY1A-DR6	P0CX70	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-ER1	P0CX71	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-LR2	P0CX72	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-PL	P0CX73	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-JR1	P0CX74	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-LR3	P0CX75	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-ML2	P0CX76	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	SFA1	P32771	386 aa		5	□□□□□ -1.61
PBP4	YDL053C	SEC8	P32855	1065 aa		5	□□□□□ -1.61
PBP4	YDL053C	MAE1	P36013	669 aa	Known RBP	5	□□□□□ -1.61
PBP4	YDL053C	TY1A-GR1	Q12085	440 aa		5	□□□□□ -1.61
PBP4	YDL053C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5	□□□□□ -1.61
PBP4	YDL053C	TY1A-OL	Q92392	440 aa	Known RBP	5	□□□□□ -1.61
PBP4	YDL053C	TAT1	P38085	619 aa		4.99	□□□□□ -1.61
PBP4	YDL053C	RPS26A	P39938	119 aa	Known RBP	4.99	□□□□□ -1.61
PBP4	YDL053C	RPS26B	P39939	119 aa	Known RBP	4.99	□□□□□ -1.61
PBP4	YDL053C	RSM26	P47141	266 aa		4.99	□□□□□ -1.61
PBP4	YDL053C	GCV1	P48015	400 aa		4.99	□□□□□ -1.61
PBP4	YDL053C	UTP22	P53254	1237 aa	Predicted RBP	4.99	□□□□□ -1.61
PBP4	YDL053C	OYE2	Q03558	400 aa	Known RBP	4.99	□□□□□ -1.61
PBP4	YDL053C	ADI1	Q03677	179 aa		4.99	□□□□□ -1.61
PBP4	YDL053C	SPR28	Q04921	423 aa		4.99	□□□□□ -1.61
PBP4	YDL053C	SQT1	P35184	431 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	EXO5	P38289	585 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	SHU2	P38957	223 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	FAR11	P53917	953 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	NOG1	Q02892	647 aa	Known RBP	4.98	□□□□□ -1.61
PBP4	YDL053C	YMR074C	Q04773	145 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	MCA1	Q08601	432 aa		4.98	□□□□□ -1.61
PBP4	YDL053C	CYC8	P14922	966 aa		4.97	□□□□□ -1.61
PBP4	YDL053C	RSC6	P25632	483 aa		4.97	□□□□□ -1.61
PBP4	YDL053C	KIP3	P53086	805 aa	Known RBP	4.97	□□□□□ -1.61
PBP4	YDL053C	ARI1	P53111	347 aa	Known RBP	4.97	□□□□□ -1.61
PBP4	YDL053C	PEX13	P80667	386 aa		4.97	□□□□□ -1.61
PBP4	YDL053C	MEC3	Q02574	474 aa		4.97	□□□□□ -1.61
PBP4	YDL053C	RAD2	P07276	1031 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	MSH3	P25336	1018 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	YKL077W	P36081	392 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	PEX28	P38848	579 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	PIC2	P40035	300 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	CCT8	P47079	568 aa	Known RBP	4.96	□□□□□ -1.62
PBP4	YDL053C	NCE103	P53615	221 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	MCD1	Q12158	566 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	REC8	Q12188	680 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	YLL054C	Q12244	843 aa		4.96	□□□□□ -1.62
PBP4	YDL053C	PRE9	P23638	258 aa	Known RBP	4.95	□□□□□ -1.62
PBP4	YDL053C	REI1	P38344	393 aa	Predicted RBP	4.95	□□□□□ -1.62
PBP4	YDL053C	NEM1	P38757	446 aa		4.95	□□□□□ -1.62
PBP4	YDL053C	MRPS18	P42847	217 aa		4.95	□□□□□ -1.62
PBP4	YDL053C	ARL1	P38116	183 aa	Known RBP	4.94	□□□□□ -1.62
PBP4	YDL053C	SLS1	P42900	643 aa		4.94	□□□□□ -1.62
PBP4	YDL053C	LSB3	P43603	459 aa	Known RBP	4.94	□□□□□ -1.62
PBP4	YDL053C	YGL140C	P53120	1219 aa		4.94	□□□□□ -1.62
PBP4	YDL053C	MTC5	Q03897	1148 aa		4.94	□□□□□ -1.62
PBP4	YDL053C	ESF1	Q06344	628 aa	Known RBP	4.94	□□□□□ -1.62
PBP4	YDL053C	ALG6	Q12001	544 aa	Known RBP	4.94	□□□□□ -1.62
PBP4	YDL053C	YOR223W	Q12015	292 aa		4.94	□□□□□ -1.62
PBP4	YDL053C	SEC23	P15303	768 aa	Known RBP	4.93	□□□□□ -1.62
PBP4	YDL053C	PEP7	P32609	515 aa		4.93	□□□□□ -1.62
PBP4	YDL053C	YPL034W	Q03083	165 aa		4.93	□□□□□ -1.62
PBP4	YDL053C	DOT1	Q04089	582 aa	Known RBP	4.93	□□□□□ -1.62
PBP4	YDL053C	HEM13	P11353	328 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	VMA4	P22203	233 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	PGM1	P33401	570 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	RDH54	P38086	958 aa		4.92	□□□□□ -1.62
PBP4	YDL053C	MTR4	P47047	1073 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	SNU71	P53207	620 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	RMD1	Q03441	430 aa		4.92	□□□□□ -1.62
PBP4	YDL053C	UTP5	Q04177	643 aa	Known RBP	4.92	□□□□□ -1.62
PBP4	YDL053C	GPT2	P36148	743 aa		4.91	□□□□□ -1.62
PBP4	YDL053C	AKR1	P39010	764 aa		4.91	□□□□□ -1.62
PBP4	YDL053C	XKS1	P42826	600 aa		4.91	□□□□□ -1.62
PBP4	YDL053C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
PBP4	YDL053C	NAM7	P30771	971 aa	Known RBP	4.9	□□□□□ -1.63
PBP4	YDL053C	SPO74	P45819	413 aa		4.9	□□□□□ -1.63
PBP4	YDL053C	YGR045C	P53229	120 aa		4.9	□□□□□ -1.63
PBP4	YDL053C	COQ2	P32378	372 aa		4.89	□□□□□ -1.63
PBP4	YDL053C	ELA1	P53861	379 aa	Predicted RBP	4.89	□□□□□ -1.63
PBP4	YDL053C	HDA2	Q06629	674 aa		4.89	□□□□□ -1.63
PBP4	YDL053C	GIC2	Q06648	383 aa		4.89	□□□□□ -1.63
PBP4	YDL053C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
PBP4	YDL053C	AVO1	Q08236	1176 aa		4.89	□□□□□ -1.63
PBP4	YDL053C	TAF13	P11747	167 aa		4.88	□□□□□ -1.63
PBP4	YDL053C	SAF1	P38352	637 aa		4.88	□□□□□ -1.63
PBP4	YDL053C	YAR028W	P39548	234 aa		4.88	□□□□□ -1.63
PBP4	YDL053C	MSH4	P40965	878 aa	Predicted RBP	4.88	□□□□□ -1.63
PBP4	YDL053C	GNP1	P48813	663 aa		4.88	□□□□□ -1.63
PBP4	YDL053C	MRL1	Q06815	381 aa		4.88	□□□□□ -1.63
PBP4	YDL053C	GCR1	P07261	785 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	PET112	P33893	541 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	ADD66	P36040	267 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	ATG14	P38270	344 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	YNR063W	P53749	607 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	EST2	Q06163	884 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	YLR122C	Q12312	125 aa		4.87	□□□□□ -1.63
PBP4	YDL053C	DED1	P06634	604 aa	Known RBP	4.86	□□□□□ -1.63
PBP4	YDL053C	PAM1	P37304	830 aa	Known RBP	4.86	□□□□□ -1.63
PBP4	YDL053C	SIW14	P53965	281 aa		4.86	□□□□□ -1.63
PBP4	YDL053C	RKM2	Q03942	479 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 34.2 ms