RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 LARP1Q6PKG0 1096 aaKnown RBP23.78■■□□□ 1.4
SHKBP1-212ENST00000596163 NFAT5O94916 1531 aa23.78■■□□□ 1.4
SHKBP1-212ENST00000596163 GLI3P10071 1580 aa23.78■■□□□ 1.4
SHKBP1-212ENST00000596163 MYOM1P52179 1685 aa23.77■■□□□ 1.4
SHKBP1-212ENST00000596163 AXIN2Q9Y2T1 843 aa23.77■■□□□ 1.4
SHKBP1-212ENST00000596163 THRAP3Q9Y2W1 955 aaKnown RBP23.77■■□□□ 1.4
SHKBP1-212ENST00000596163 CSB-PGBD3P0DP91 1061 aa23.76■■□□□ 1.39
SHKBP1-212ENST00000596163 LMO7Q8WWI1 1683 aa23.76■■□□□ 1.39
SHKBP1-212ENST00000596163 COL5A2P05997 1499 aaPredicted RBP23.75■■□□□ 1.39
SHKBP1-212ENST00000596163 TOM1L2Q6ZVM7 507 aa23.75■■□□□ 1.39
SHKBP1-212ENST00000596163 TCP11L2Q8N4U5 519 aa23.75■■□□□ 1.39
SHKBP1-212ENST00000596163 USP35Q9P2H5 1018 aa23.75■■□□□ 1.39
SHKBP1-212ENST00000596163 BARGINQ6ZT62 677 aa23.74■■□□□ 1.39
SHKBP1-212ENST00000596163 WDR17Q8IZU2 1322 aa23.74■■□□□ 1.39
SHKBP1-212ENST00000596163 ABCC6O95255 1503 aa23.74■■□□□ 1.39
SHKBP1-212ENST00000596163 ZEB1P37275 1124 aaPredicted RBP23.73■■□□□ 1.39
SHKBP1-212ENST00000596163 AMPHP49418 695 aa23.73■■□□□ 1.39
SHKBP1-212ENST00000596163 IP6K1Q92551 441 aa23.73■■□□□ 1.39
SHKBP1-212ENST00000596163 KNSTRNQ9Y448 316 aa23.73■■□□□ 1.39
SHKBP1-212ENST00000596163 CRB1P82279 1406 aa23.73■■□□□ 1.39
SHKBP1-212ENST00000596163 CCDC7Q96M83 1385 aa23.7■■□□□ 1.38
SHKBP1-212ENST00000596163 MAP3K19Q56UN5 1328 aa23.7■■□□□ 1.38
SHKBP1-212ENST00000596163 KRT27Q7Z3Y8 459 aa23.7■■□□□ 1.38
SHKBP1-212ENST00000596163 CARD10Q9BWT7 1032 aa23.69■■□□□ 1.38
SHKBP1-212ENST00000596163 COL18A1P39060 1754 aa23.69■■□□□ 1.38
SHKBP1-212ENST00000596163 BLMP54132 1417 aaPredicted RBP23.68■■□□□ 1.38
SHKBP1-212ENST00000596163 NSD2O96028 1365 aa23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 WASHC2AQ641Q2 1341 aa23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 FBLN1P23142 703 aa23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 ANKRD24Q8TF21 1146 aa23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 UPF1Q92900 1129 aaKnown RBP eCLIP23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 CDCA7Q9BWT1 371 aaPredicted RBP23.67■■□□□ 1.38
SHKBP1-212ENST00000596163 ERBB3P21860 1342 aa23.66■■□□□ 1.38
SHKBP1-212ENST00000596163 HOXC9P31274 260 aa23.66■■□□□ 1.38
SHKBP1-212ENST00000596163 RRS1Q15050 365 aaKnown RBP23.66■■□□□ 1.38
SHKBP1-212ENST00000596163 RTL1A6NKG5 1358 aa23.65■■□□□ 1.38
SHKBP1-212ENST00000596163 NLRP2Q9NX02 1062 aa23.65■■□□□ 1.38
SHKBP1-212ENST00000596163 KIF24Q5T7B8 1368 aa23.65■■□□□ 1.38
SHKBP1-212ENST00000596163 KIF20BQ96Q89 1820 aa23.64■■□□□ 1.38
SHKBP1-212ENST00000596163 PDE3BQ13370 1112 aa23.64■■□□□ 1.37
SHKBP1-212ENST00000596163 CCDC125Q86Z20 511 aa23.63■■□□□ 1.37
SHKBP1-212ENST00000596163 MORC1Q86VD1 984 aa23.62■■□□□ 1.37
SHKBP1-212ENST00000596163 LTV1Q96GA3 475 aaPredicted RBP23.62■■□□□ 1.37
SHKBP1-212ENST00000596163 LTN1O94822 1766 aa23.6■■□□□ 1.37
SHKBP1-212ENST00000596163 FLT4P35916 1363 aa23.59■■□□□ 1.37
SHKBP1-212ENST00000596163 THSD7AQ9UPZ6 1657 aa23.58■■□□□ 1.37
SHKBP1-212ENST00000596163 PPM1GO15355 546 aaPredicted RBP23.58■■□□□ 1.37
SHKBP1-212ENST00000596163 PER1O15534 1290 aaPredicted RBP23.58■■□□□ 1.37
SHKBP1-212ENST00000596163 DDB1Q16531 1140 aa23.58■■□□□ 1.37
SHKBP1-212ENST00000596163 SMG6Q86US8 1419 aaKnown RBP23.58■■□□□ 1.36
SHKBP1-212ENST00000596163 INSRP06213 1382 aa23.57■■□□□ 1.36
SHKBP1-212ENST00000596163 TNNT2P45379 298 aaPredicted RBP23.57■■□□□ 1.36
SHKBP1-212ENST00000596163 AMER1Q5JTC6 1135 aaPredicted RBP23.57■■□□□ 1.36
SHKBP1-212ENST00000596163 EMILIN1Q9Y6C2 1016 aa23.57■■□□□ 1.36
SHKBP1-212ENST00000596163 HSP90AB2PQ58FF8 381 aa23.56■■□□□ 1.36
SHKBP1-212ENST00000596163 FAM196AQ6ZSG2 479 aa23.56■■□□□ 1.36
SHKBP1-212ENST00000596163 POLKQ9UBT6 870 aa23.56■■□□□ 1.36
SHKBP1-212ENST00000596163 EXOC5O00471 708 aa23.55■■□□□ 1.36
SHKBP1-212ENST00000596163 SF3B2Q13435 895 aaKnown RBP23.55■■□□□ 1.36
SHKBP1-212ENST00000596163 RGPD5Q99666 1765 aa23.55■■□□□ 1.36
SHKBP1-212ENST00000596163 IL2RBP14784 551 aa23.54■■□□□ 1.36
SHKBP1-212ENST00000596163 BRWD3Q6RI45 1802 aa23.52■■□□□ 1.36
SHKBP1-212ENST00000596163 NPC1L1Q9UHC9 1359 aa23.51■■□□□ 1.35
SHKBP1-212ENST00000596163 FAM182BQ5T319 152 aa23.5■■□□□ 1.35
SHKBP1-212ENST00000596163 DISP2A7MBM2 1401 aa23.5■■□□□ 1.35
SHKBP1-212ENST00000596163 CC2D1BQ5T0F9 858 aaKnown RBP23.49■■□□□ 1.35
SHKBP1-212ENST00000596163 NBPF6Q5VWK0 638 aa23.49■■□□□ 1.35
SHKBP1-212ENST00000596163 NBPF4Q96M43 638 aa23.49■■□□□ 1.35
SHKBP1-212ENST00000596163 ANKRD26Q9UPS8 1709 aa23.48■■□□□ 1.35
SHKBP1-212ENST00000596163 PARP4Q9UKK3 1724 aaKnown RBP23.47■■□□□ 1.35
SHKBP1-212ENST00000596163 FAM208AQ9UK61 1670 aaKnown RBP23.46■■□□□ 1.35
SHKBP1-212ENST00000596163 RAPGEF4Q8WZA2 1011 aa23.45■■□□□ 1.34
SHKBP1-212ENST00000596163 OVOS2A0A0G2JMS6 1433 aa23.44■■□□□ 1.34
SHKBP1-212ENST00000596163 MARCH10Q8NA82 808 aaPredicted RBP23.44■■□□□ 1.34
SHKBP1-212ENST00000596163 PEAK1Q9H792 1746 aa23.44■■□□□ 1.34
SHKBP1-212ENST00000596163 TATP17735 454 aaPredicted RBP23.43■■□□□ 1.34
SHKBP1-212ENST00000596163 BAG6P46379 1132 aa23.43■■□□□ 1.34
SHKBP1-212ENST00000596163 TRIM37O94972 964 aa23.42■■□□□ 1.34
SHKBP1-212ENST00000596163 USHBP1Q8N6Y0 703 aa23.42■■□□□ 1.34
SHKBP1-212ENST00000596163 TNS2Q63HR2 1409 aa23.42■■□□□ 1.34
SHKBP1-212ENST00000596163 MAP2P11137 1827 aaKnown RBP23.41■■□□□ 1.34
SHKBP1-212ENST00000596163 CNGB1Q14028 1251 aaPredicted RBP23.41■■□□□ 1.34
SHKBP1-212ENST00000596163 EIF4A2Q14240 407 aaKnown RBP23.41■■□□□ 1.34
SHKBP1-212ENST00000596163 ZCRB1Q8TBF4 217 aaKnown RBP23.4■■□□□ 1.34
SHKBP1-212ENST00000596163 EYA1Q99502 592 aa23.4■■□□□ 1.34
SHKBP1-212ENST00000596163 LRRC37A3O60309 1634 aa23.4■■□□□ 1.34
SHKBP1-212ENST00000596163 MTHFSP49914 203 aa23.39■■□□□ 1.33
SHKBP1-212ENST00000596163 BCL9O00512 1426 aa23.38■■□□□ 1.33
SHKBP1-212ENST00000596163 WNK3Q9BYP7 1800 aa23.38■■□□□ 1.33
SHKBP1-212ENST00000596163 DDX54Q8TDD1 881 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-212ENST00000596163 APBA3O96018 575 aa23.36■■□□□ 1.33
SHKBP1-212ENST00000596163 DEFB132Q7Z7B7 95 aa23.36■■□□□ 1.33
SHKBP1-212ENST00000596163 BCL11BQ9C0K0 894 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-212ENST00000596163 EP400Q96L91 3159 aa23.33■■□□□ 1.33
SHKBP1-212ENST00000596163 DDX10Q13206 875 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-212ENST00000596163 MEGF6O75095 1541 aa23.33■■□□□ 1.32
SHKBP1-212ENST00000596163 NCAPD2Q15021 1401 aa23.33■■□□□ 1.32
SHKBP1-212ENST00000596163 SPG7Q9UQ90 795 aa23.32■■□□□ 1.32
SHKBP1-212ENST00000596163 IGSF1Q8N6C5 1336 aa23.32■■□□□ 1.32
SHKBP1-212ENST00000596163 RGPD1P0DJD0 1748 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms