RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 PPM1GO15355 546 aaPredicted RBP12.35□□□□□ -0.43
CHD9-219ENST00000569225 FBLN1P23142 703 aa12.35□□□□□ -0.43
CHD9-219ENST00000569225 HOXC9P31274 260 aa12.35□□□□□ -0.43
CHD9-219ENST00000569225 VPS72Q15906 364 aa12.35□□□□□ -0.43
CHD9-219ENST00000569225 QTRT2Q9H974 415 aaKnown RBP12.35□□□□□ -0.43
CHD9-219ENST00000569225 STRN4Q9NRL3 753 aa12.35□□□□□ -0.43
CHD9-219ENST00000569225 POLKQ9UBT6 870 aa12.35□□□□□ -0.43
CHD9-219ENST00000569225 ANKRD26Q9UPS8 1709 aa12.34□□□□□ -0.43
CHD9-219ENST00000569225 CSB-PGBD3P0DP91 1061 aa12.34□□□□□ -0.43
CHD9-219ENST00000569225 CCDC9Q9Y3X0 531 aaKnown RBP12.34□□□□□ -0.43
CHD9-219ENST00000569225 EMILIN1Q9Y6C2 1016 aa12.34□□□□□ -0.43
CHD9-219ENST00000569225 RALBP1Q15311 655 aa12.34□□□□□ -0.43
CHD9-219ENST00000569225 RGS17Q9UGC6 210 aaPredicted RBP12.34□□□□□ -0.43
CHD9-219ENST00000569225 AXIN2Q9Y2T1 843 aa12.34□□□□□ -0.43
CHD9-219ENST00000569225 CAMTA1Q9Y6Y1 1673 aa12.33□□□□□ -0.43
CHD9-219ENST00000569225 NWD2Q9ULI1 1742 aa12.33□□□□□ -0.43
CHD9-219ENST00000569225 ATRNO75882 1429 aa12.33□□□□□ -0.44
CHD9-219ENST00000569225 SMG6Q86US8 1419 aaKnown RBP12.33□□□□□ -0.44
CHD9-219ENST00000569225 COL5A2P05997 1499 aaPredicted RBP12.33□□□□□ -0.44
CHD9-219ENST00000569225 PLCH1Q4KWH8 1693 aa12.33□□□□□ -0.44
CHD9-219ENST00000569225 LMO7Q8WWI1 1683 aa12.33□□□□□ -0.44
CHD9-219ENST00000569225 WDR17Q8IZU2 1322 aa12.33□□□□□ -0.44
CHD9-219ENST00000569225 INSRP06213 1382 aa12.33□□□□□ -0.44
CHD9-219ENST00000569225 ANKRD24Q8TF21 1146 aa12.32□□□□□ -0.44
CHD9-219ENST00000569225 ERBB3P21860 1342 aa12.32□□□□□ -0.44
CHD9-219ENST00000569225 RXRBP28702 533 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 RBM6P78332 1123 aaKnown RBP12.31□□□□□ -0.44
CHD9-219ENST00000569225 LARP1Q6PKG0 1096 aaKnown RBP12.31□□□□□ -0.44
CHD9-219ENST00000569225 TOM1L2Q6ZVM7 507 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 GJD4Q96KN9 370 aaPredicted RBP12.31□□□□□ -0.44
CHD9-219ENST00000569225 PARD3Q8TEW0 1356 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 CRB1P82279 1406 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 SPATA31A5Q5VU36 1347 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 SPATA31A7Q8IWB4 1347 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 HSP90AB2PQ58FF8 381 aa12.31□□□□□ -0.44
CHD9-219ENST00000569225 LTV1Q96GA3 475 aaPredicted RBP12.31□□□□□ -0.44
CHD9-219ENST00000569225 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.3□□□□□ -0.44
CHD9-219ENST00000569225 CDK12Q9NYV4 1490 aaPredicted RBP12.3□□□□□ -0.44
CHD9-219ENST00000569225 MTHFSP49914 203 aa12.3□□□□□ -0.44
CHD9-219ENST00000569225 POTEAQ6S8J7 498 aa12.3□□□□□ -0.44
CHD9-219ENST00000569225 NLRP2Q9NX02 1062 aa12.3□□□□□ -0.44
CHD9-219ENST00000569225 PPP2R1AP30153 589 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 CFAP53Q96M91 514 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 CARD10Q9BWT7 1032 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 LTN1O94822 1766 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 COL18A1P39060 1754 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 NRAPQ86VF7 1730 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 SPATA31A1Q5TZJ5 1347 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 TCP11L2Q8N4U5 519 aa12.29□□□□□ -0.44
CHD9-219ENST00000569225 THRAP3Q9Y2W1 955 aaKnown RBP12.29□□□□□ -0.44
CHD9-219ENST00000569225 USP35Q9P2H5 1018 aa12.28□□□□□ -0.44
CHD9-219ENST00000569225 ANP32CO43423 234 aa12.27□□□□□ -0.44
CHD9-219ENST00000569225 PRKRIP1Q9H875 184 aaPredicted RBP12.27□□□□□ -0.44
CHD9-219ENST00000569225 MYBBP1AQ9BQG0 1328 aaKnown RBP12.27□□□□□ -0.45
CHD9-219ENST00000569225 BARGINQ6ZT62 677 aa12.27□□□□□ -0.45
CHD9-219ENST00000569225 CDCA7Q9BWT1 371 aaPredicted RBP12.27□□□□□ -0.45
CHD9-219ENST00000569225 PEAK1Q9H792 1746 aa12.26□□□□□ -0.45
CHD9-219ENST00000569225 EIF4A2Q14240 407 aaKnown RBP12.26□□□□□ -0.45
CHD9-219ENST00000569225 A0A0G2JS52 829 aa12.25□□□□□ -0.45
CHD9-219ENST00000569225 DIAPH1O60610 1272 aaKnown RBP12.25□□□□□ -0.45
CHD9-219ENST00000569225 MYT1Q01538 1121 aa12.25□□□□□ -0.45
CHD9-219ENST00000569225 FAM98CQ17RN3 349 aaKnown RBP12.25□□□□□ -0.45
CHD9-219ENST00000569225 ONECUT3O60422 494 aaPredicted RBP12.24□□□□□ -0.45
CHD9-219ENST00000569225 NBPF6Q5VWK0 638 aa12.24□□□□□ -0.45
CHD9-219ENST00000569225 NBPF4Q96M43 638 aa12.24□□□□□ -0.45
CHD9-219ENST00000569225 IL13P35225 146 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 NUDCQ9Y266 331 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 GLI3P10071 1580 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 FAM208AQ9UK61 1670 aaKnown RBP12.23□□□□□ -0.45
CHD9-219ENST00000569225 IL2RBP14784 551 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 SEPT12Q8IYM1 358 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 RAPGEF4Q8WZA2 1011 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 EYA1Q99502 592 aa12.23□□□□□ -0.45
CHD9-219ENST00000569225 MAP2P11137 1827 aaKnown RBP12.22□□□□□ -0.45
CHD9-219ENST00000569225 IGSF1Q8N6C5 1336 aa12.22□□□□□ -0.45
CHD9-219ENST00000569225 USHBP1Q8N6Y0 703 aa12.21□□□□□ -0.45
CHD9-219ENST00000569225 RGS12O14924 1447 aa12.21□□□□□ -0.45
CHD9-219ENST00000569225 U2SURPO15042 1029 aaKnown RBP12.21□□□□□ -0.46
CHD9-219ENST00000569225 TATP17735 454 aaPredicted RBP12.21□□□□□ -0.46
CHD9-219ENST00000569225 COL3A1P02461 1466 aaPredicted RBP12.2□□□□□ -0.46
CHD9-219ENST00000569225 RGPD5Q99666 1765 aa12.2□□□□□ -0.46
CHD9-219ENST00000569225 DDB1Q16531 1140 aa12.2□□□□□ -0.46
CHD9-219ENST00000569225 DISP2A7MBM2 1401 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 NCAPD2Q15021 1401 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 PDE3BQ13370 1112 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 DIEXFQ68CQ4 756 aaKnown RBP12.19□□□□□ -0.46
CHD9-219ENST00000569225 PLEKHG2Q9H7P9 1386 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 EXOC5O00471 708 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 SULT6B1Q6IMI4 303 aa12.19□□□□□ -0.46
CHD9-219ENST00000569225 KRT27Q7Z3Y8 459 aa12.18□□□□□ -0.46
CHD9-219ENST00000569225 THSD7AQ9UPZ6 1657 aa12.17□□□□□ -0.46
CHD9-219ENST00000569225 U2AF1L5P0DN76 240 aaPredicted RBP12.17□□□□□ -0.46
CHD9-219ENST00000569225 U2AF1Q01081 240 aaKnown RBP eCLIP12.17□□□□□ -0.46
CHD9-219ENST00000569225 KDRP35968 1356 aa12.17□□□□□ -0.46
CHD9-219ENST00000569225 OVOS2A0A0G2JMS6 1433 aa12.17□□□□□ -0.46
CHD9-219ENST00000569225 ZCRB1Q8TBF4 217 aaKnown RBP12.17□□□□□ -0.46
CHD9-219ENST00000569225 SPG7Q9UQ90 795 aa12.17□□□□□ -0.46
CHD9-219ENST00000569225 TNS2Q63HR2 1409 aa12.16□□□□□ -0.46
CHD9-219ENST00000569225 MEGF6O75095 1541 aa12.16□□□□□ -0.46
CHD9-219ENST00000569225 HMOX1P09601 288 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms