RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 PIK3C2AO00443 1686 aa15.69■□□□□ 0.1
CDH3-206ENST00000567674 USP54Q70EL1 1684 aa15.69■□□□□ 0.1
CDH3-206ENST00000567674 MON2Q7Z3U7 1717 aa15.68■□□□□ 0.1
CDH3-206ENST00000567674 TMC1Q8TDI8 760 aa15.68■□□□□ 0.1
CDH3-206ENST00000567674 SLC12A5Q9H2X9 1139 aa15.68■□□□□ 0.1
CDH3-206ENST00000567674 STRN4Q9NRL3 753 aa15.68■□□□□ 0.1
CDH3-206ENST00000567674 USP47Q96K76 1375 aa15.67■□□□□ 0.1
CDH3-206ENST00000567674 A0A0G2JS52 829 aa15.67■□□□□ 0.1
CDH3-206ENST00000567674 MYT1Q01538 1121 aa15.67■□□□□ 0.1
CDH3-206ENST00000567674 WDR17Q8IZU2 1322 aa15.67■□□□□ 0.1
CDH3-206ENST00000567674 LARP1Q6PKG0 1096 aaKnown RBP15.66■□□□□ 0.1
CDH3-206ENST00000567674 ANKRD36BQ8N2N9 1353 aa15.65■□□□□ 0.1
CDH3-206ENST00000567674 A0A1W2PP64 1363 aa15.64■□□□□ 0.09
CDH3-206ENST00000567674 PDE3BQ13370 1112 aa15.64■□□□□ 0.09
CDH3-206ENST00000567674 CARD10Q9BWT7 1032 aa15.64■□□□□ 0.09
CDH3-206ENST00000567674 PCGF6Q9BYE7 350 aa15.64■□□□□ 0.09
CDH3-206ENST00000567674 NFAT5O94916 1531 aa15.63■□□□□ 0.09
CDH3-206ENST00000567674 PARD3Q8TEW0 1356 aa15.63■□□□□ 0.09
CDH3-206ENST00000567674 BCL9O00512 1426 aa15.63■□□□□ 0.09
CDH3-206ENST00000567674 COL18A1P39060 1754 aa15.63■□□□□ 0.09
CDH3-206ENST00000567674 CCDC7Q96M83 1385 aa15.62■□□□□ 0.09
CDH3-206ENST00000567674 EZH2Q15910 746 aaKnown RBP15.62■□□□□ 0.09
CDH3-206ENST00000567674 AXIN2Q9Y2T1 843 aa15.62■□□□□ 0.09
CDH3-206ENST00000567674 OVOS2A0A0J9YW53 1432 aa15.61■□□□□ 0.09
CDH3-206ENST00000567674 OVOS2Q6IE36 1432 aa15.61■□□□□ 0.09
CDH3-206ENST00000567674 TOM1L2Q6ZVM7 507 aa15.61■□□□□ 0.09
CDH3-206ENST00000567674 TNS1Q9HBL0 1735 aaKnown RBP15.6■□□□□ 0.09
CDH3-206ENST00000567674 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.6■□□□□ 0.09
CDH3-206ENST00000567674 CCER1Q8TC90 406 aaPredicted RBP15.6■□□□□ 0.09
CDH3-206ENST00000567674 COG3Q96JB2 828 aa15.6■□□□□ 0.09
CDH3-206ENST00000567674 CAMKK2Q96RR4 588 aa15.6■□□□□ 0.09
CDH3-206ENST00000567674 PPP1R1BQ9UD71 204 aaPredicted RBP15.6■□□□□ 0.09
CDH3-206ENST00000567674 PARP4Q9UKK3 1724 aaKnown RBP15.6■□□□□ 0.09
CDH3-206ENST00000567674 NME9Q86XW9 330 aa15.59■□□□□ 0.09
CDH3-206ENST00000567674 USP35Q9P2H5 1018 aa15.59■□□□□ 0.09
CDH3-206ENST00000567674 KIF24Q5T7B8 1368 aa15.59■□□□□ 0.09
CDH3-206ENST00000567674 SENP3-EIF4A1A0A087X0R7 540 aa15.58■□□□□ 0.08
CDH3-206ENST00000567674 DDB1Q16531 1140 aa15.58■□□□□ 0.08
CDH3-206ENST00000567674 IP6K1Q92551 441 aa15.58■□□□□ 0.08
CDH3-206ENST00000567674 ERBB3P21860 1342 aa15.58■□□□□ 0.08
CDH3-206ENST00000567674 FAM182BQ5T319 152 aa15.57■□□□□ 0.08
CDH3-206ENST00000567674 SPON1Q9HCB6 807 aa15.57■□□□□ 0.08
CDH3-206ENST00000567674 CSB-PGBD3P0DP91 1061 aa15.56■□□□□ 0.08
CDH3-206ENST00000567674 EIF4G2P78344 907 aaKnown RBP eCLIP15.56■□□□□ 0.08
CDH3-206ENST00000567674 OVOS2A0A0G2JMS6 1433 aa15.56■□□□□ 0.08
CDH3-206ENST00000567674 RTL1A6NKG5 1358 aa15.55■□□□□ 0.08
CDH3-206ENST00000567674 EXOC5O00471 708 aa15.55■□□□□ 0.08
CDH3-206ENST00000567674 FYB1O15117 783 aa15.55■□□□□ 0.08
CDH3-206ENST00000567674 NBPF14Q5TI25 921 aa15.55■□□□□ 0.08
CDH3-206ENST00000567674 ZNF784Q8NCA9 323 aaPredicted RBP15.55■□□□□ 0.08
CDH3-206ENST00000567674 PLSCR1O15162 318 aa15.54■□□□□ 0.08
CDH3-206ENST00000567674 ZBTB7CA1YPR0 619 aa15.53■□□□□ 0.08
CDH3-206ENST00000567674 KCNQ2O43526 872 aa15.53■□□□□ 0.08
CDH3-206ENST00000567674 APBA3O96018 575 aa15.53■□□□□ 0.08
CDH3-206ENST00000567674 TRIM37O94972 964 aa15.52■□□□□ 0.08
CDH3-206ENST00000567674 RREB1Q92766 1687 aa15.51■□□□□ 0.07
CDH3-206ENST00000567674 IL2RBP14784 551 aa15.51■□□□□ 0.07
CDH3-206ENST00000567674 C1QTNF8P60827 252 aa15.51■□□□□ 0.07
CDH3-206ENST00000567674 ANKRD24Q8TF21 1146 aa15.51■□□□□ 0.07
CDH3-206ENST00000567674 BCL11BQ9C0K0 894 aaPredicted RBP15.51■□□□□ 0.07
CDH3-206ENST00000567674 CGNL1Q0VF96 1302 aa15.5■□□□□ 0.07
CDH3-206ENST00000567674 SOX12O15370 315 aa15.5■□□□□ 0.07
CDH3-206ENST00000567674 FAM208AQ9UK61 1670 aaKnown RBP15.5■□□□□ 0.07
CDH3-206ENST00000567674 HOXC9P31274 260 aa15.49■□□□□ 0.07
CDH3-206ENST00000567674 NLRP2Q9NX02 1062 aa15.49■□□□□ 0.07
CDH3-206ENST00000567674 NUP188Q5SRE5 1749 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 PEAK1Q9H792 1746 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 MAP3K19Q56UN5 1328 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 AMPHP49418 695 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 LTN1O94822 1766 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 TNS2Q63HR2 1409 aa15.48■□□□□ 0.07
CDH3-206ENST00000567674 LRRC37A3O60309 1634 aa15.47■□□□□ 0.07
CDH3-206ENST00000567674 HMGB2P26583 209 aaKnown RBP15.47■□□□□ 0.07
CDH3-206ENST00000567674 MARCH10Q8NA82 808 aaPredicted RBP15.47■□□□□ 0.07
CDH3-206ENST00000567674 WNK3Q9BYP7 1800 aa15.47■□□□□ 0.07
CDH3-206ENST00000567674 RGPD3A6NKT7 1758 aaPredicted RBP15.47■□□□□ 0.07
CDH3-206ENST00000567674 RGPD4Q7Z3J3 1758 aa15.47■□□□□ 0.07
CDH3-206ENST00000567674 RGPD5Q99666 1765 aa15.47■□□□□ 0.07
CDH3-206ENST00000567674 CARD14Q9BXL6 1004 aa15.46■□□□□ 0.07
CDH3-206ENST00000567674 INSRP06213 1382 aa15.46■□□□□ 0.07
CDH3-206ENST00000567674 SMG6Q86US8 1419 aaKnown RBP15.45■□□□□ 0.06
CDH3-206ENST00000567674 GGNBP2Q9H3C7 697 aa15.45■□□□□ 0.06
CDH3-206ENST00000567674 FLT4P35916 1363 aa15.45■□□□□ 0.06
CDH3-206ENST00000567674 PLEKHG2Q9H7P9 1386 aa15.45■□□□□ 0.06
CDH3-206ENST00000567674 HSPA5P11021 654 aaKnown RBP15.44■□□□□ 0.06
CDH3-206ENST00000567674 NSD2O96028 1365 aa15.44■□□□□ 0.06
CDH3-206ENST00000567674 NSD3Q9BZ95 1437 aa15.43■□□□□ 0.06
CDH3-206ENST00000567674 UTRNP46939 3433 aa15.42■□□□□ 0.06
CDH3-206ENST00000567674 WASHC2AQ641Q2 1341 aa15.42■□□□□ 0.06
CDH3-206ENST00000567674 MYOM1P52179 1685 aa15.41■□□□□ 0.06
CDH3-206ENST00000567674 SBF2Q86WG5 1849 aa15.4■□□□□ 0.06
CDH3-206ENST00000567674 KIF20BQ96Q89 1820 aa15.4■□□□□ 0.06
CDH3-206ENST00000567674 RRS1Q15050 365 aaKnown RBP15.38■□□□□ 0.05
CDH3-206ENST00000567674 ZCRB1Q8TBF4 217 aaKnown RBP15.38■□□□□ 0.05
CDH3-206ENST00000567674 RAPGEF4Q8WZA2 1011 aa15.38■□□□□ 0.05
CDH3-206ENST00000567674 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.38■□□□□ 0.05
CDH3-206ENST00000567674 NBPF6Q5VWK0 638 aa15.37■□□□□ 0.05
CDH3-206ENST00000567674 NBPF4Q96M43 638 aa15.37■□□□□ 0.05
CDH3-206ENST00000567674 NCAPD2Q15021 1401 aa15.36■□□□□ 0.05
CDH3-206ENST00000567674 PANK3Q9H999 370 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms