RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 CFAP53Q96M91 514 aa27.07■■□□□ 1.92
USP53-203ENST00000507597 PRKRIP1Q9H875 184 aaPredicted RBP27.07■■□□□ 1.92
USP53-203ENST00000507597 USP21Q9UK80 565 aa27.07■■□□□ 1.92
USP53-203ENST00000507597 BLMP54132 1417 aaPredicted RBP27.07■■□□□ 1.92
USP53-203ENST00000507597 FBLN1P23142 703 aa27.06■■□□□ 1.92
USP53-203ENST00000507597 HOXC9P31274 260 aa27.06■■□□□ 1.92
USP53-203ENST00000507597 UNC5CLQ8IV45 518 aa27.05■■□□□ 1.92
USP53-203ENST00000507597 EMILIN1Q9Y6C2 1016 aa27.05■■□□□ 1.92
USP53-203ENST00000507597 AFF2P51816 1311 aa27.05■■□□□ 1.92
USP53-203ENST00000507597 PPP2R1AP30153 589 aa27.04■■□□□ 1.92
USP53-203ENST00000507597 MTHFSP49914 203 aa27.04■■□□□ 1.92
USP53-203ENST00000507597 SMG6Q86US8 1419 aaKnown RBP27.04■■□□□ 1.92
USP53-203ENST00000507597 SLIT2O94813 1529 aa27.03■■□□□ 1.92
USP53-203ENST00000507597 CSB-PGBD3P0DP91 1061 aa27.03■■□□□ 1.92
USP53-203ENST00000507597 DIEXFQ68CQ4 756 aaKnown RBP27.03■■□□□ 1.92
USP53-203ENST00000507597 MYBBP1AQ9BQG0 1328 aaKnown RBP27.03■■□□□ 1.92
USP53-203ENST00000507597 INSRP06213 1382 aa27.02■■□□□ 1.92
USP53-203ENST00000507597 STRN4Q9NRL3 753 aa27.01■■□□□ 1.91
USP53-203ENST00000507597 TRPC5Q9UL62 973 aaPredicted RBP27.01■■□□□ 1.91
USP53-203ENST00000507597 MAP2P11137 1827 aaKnown RBP27■■□□□ 1.91
USP53-203ENST00000507597 LTN1O94822 1766 aa27■■□□□ 1.91
USP53-203ENST00000507597 NWD2Q9ULI1 1742 aa26.99■■□□□ 1.91
USP53-203ENST00000507597 ANKRD24Q8TF21 1146 aa26.99■■□□□ 1.91
USP53-203ENST00000507597 AXIN2Q9Y2T1 843 aa26.99■■□□□ 1.91
USP53-203ENST00000507597 CCDC9Q9Y3X0 531 aaKnown RBP26.98■■□□□ 1.91
USP53-203ENST00000507597 HSP90AB2PQ58FF8 381 aa26.97■■□□□ 1.91
USP53-203ENST00000507597 CDK12Q9NYV4 1490 aaPredicted RBP26.97■■□□□ 1.91
USP53-203ENST00000507597 ERBB3P21860 1342 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 WDR17Q8IZU2 1322 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 CAMTA1Q9Y6Y1 1673 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 VPS72Q15906 364 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 TOM1L2Q6ZVM7 507 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 NUDCQ9Y266 331 aa26.96■■□□□ 1.91
USP53-203ENST00000507597 LMO7Q8WWI1 1683 aa26.95■■□□□ 1.91
USP53-203ENST00000507597 COL5A2P05997 1499 aaPredicted RBP26.95■■□□□ 1.91
USP53-203ENST00000507597 LTV1Q96GA3 475 aaPredicted RBP26.95■■□□□ 1.9
USP53-203ENST00000507597 QTRT2Q9H974 415 aaKnown RBP26.95■■□□□ 1.9
USP53-203ENST00000507597 PLCH1Q4KWH8 1693 aa26.95■■□□□ 1.9
USP53-203ENST00000507597 BCL9LQ86UU0 1499 aa26.94■■□□□ 1.9
USP53-203ENST00000507597 DIAPH1O60610 1272 aaKnown RBP26.94■■□□□ 1.9
USP53-203ENST00000507597 COL18A1P39060 1754 aa26.94■■□□□ 1.9
USP53-203ENST00000507597 NLRP2Q9NX02 1062 aa26.92■■□□□ 1.9
USP53-203ENST00000507597 THRAP3Q9Y2W1 955 aaKnown RBP26.92■■□□□ 1.9
USP53-203ENST00000507597 CRB1P82279 1406 aa26.91■■□□□ 1.9
USP53-203ENST00000507597 CARD10Q9BWT7 1032 aa26.91■■□□□ 1.9
USP53-203ENST00000507597 LARP1Q6PKG0 1096 aaKnown RBP26.9■■□□□ 1.9
USP53-203ENST00000507597 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.9■■□□□ 1.9
USP53-203ENST00000507597 EIF4A2Q14240 407 aaKnown RBP26.89■■□□□ 1.9
USP53-203ENST00000507597 GJD4Q96KN9 370 aaPredicted RBP26.88■■□□□ 1.89
USP53-203ENST00000507597 RBM6P78332 1123 aaKnown RBP26.87■■□□□ 1.89
USP53-203ENST00000507597 ATRNO75882 1429 aa26.87■■□□□ 1.89
USP53-203ENST00000507597 PEAK1Q9H792 1746 aa26.87■■□□□ 1.89
USP53-203ENST00000507597 SPATA31A5Q5VU36 1347 aa26.87■■□□□ 1.89
USP53-203ENST00000507597 SPATA31A7Q8IWB4 1347 aa26.87■■□□□ 1.89
USP53-203ENST00000507597 TCP11L2Q8N4U5 519 aa26.86■■□□□ 1.89
USP53-203ENST00000507597 RXRBP28702 533 aa26.85■■□□□ 1.89
USP53-203ENST00000507597 IL13P35225 146 aa26.85■■□□□ 1.89
USP53-203ENST00000507597 CDCA7Q9BWT1 371 aaPredicted RBP26.85■■□□□ 1.89
USP53-203ENST00000507597 FAM208AQ9UK61 1670 aaKnown RBP26.85■■□□□ 1.89
USP53-203ENST00000507597 SPATA31A1Q5TZJ5 1347 aa26.85■■□□□ 1.89
USP53-203ENST00000507597 NRAPQ86VF7 1730 aa26.85■■□□□ 1.89
USP53-203ENST00000507597 USP35Q9P2H5 1018 aa26.84■■□□□ 1.89
USP53-203ENST00000507597 RGPD5Q99666 1765 aa26.83■■□□□ 1.89
USP53-203ENST00000507597 U2SURPO15042 1029 aaKnown RBP26.82■■□□□ 1.88
USP53-203ENST00000507597 BARGINQ6ZT62 677 aa26.82■■□□□ 1.88
USP53-203ENST00000507597 NBPF6Q5VWK0 638 aa26.81■■□□□ 1.88
USP53-203ENST00000507597 NBPF4Q96M43 638 aa26.81■■□□□ 1.88
USP53-203ENST00000507597 EYA1Q99502 592 aa26.81■■□□□ 1.88
USP53-203ENST00000507597 PNNQ9H307 717 aaKnown RBP26.81■■□□□ 1.88
USP53-203ENST00000507597 RAPGEF4Q8WZA2 1011 aa26.8■■□□□ 1.88
USP53-203ENST00000507597 RGS17Q9UGC6 210 aaPredicted RBP26.8■■□□□ 1.88
USP53-203ENST00000507597 WDR43Q15061 677 aaKnown RBP eCLIP26.79■■□□□ 1.88
USP53-203ENST00000507597 IGSF1Q8N6C5 1336 aa26.79■■□□□ 1.88
USP53-203ENST00000507597 MRS2Q9HD23 443 aa26.78■■□□□ 1.88
USP53-203ENST00000507597 A0A0G2JS52 829 aa26.77■■□□□ 1.88
USP53-203ENST00000507597 NEFMP07197 916 aa26.77■■□□□ 1.88
USP53-203ENST00000507597 IL2RBP14784 551 aa26.77■■□□□ 1.88
USP53-203ENST00000507597 MYT1Q01538 1121 aa26.77■■□□□ 1.88
USP53-203ENST00000507597 CCER2I3L3R5 266 aa26.76■■□□□ 1.87
USP53-203ENST00000507597 U2AF1L5P0DN76 240 aaPredicted RBP26.76■■□□□ 1.87
USP53-203ENST00000507597 TATP17735 454 aaPredicted RBP26.76■■□□□ 1.87
USP53-203ENST00000507597 U2AF1Q01081 240 aaKnown RBP eCLIP26.76■■□□□ 1.87
USP53-203ENST00000507597 COL3A1P02461 1466 aaPredicted RBP26.75■■□□□ 1.87
USP53-203ENST00000507597 FAM98CQ17RN3 349 aaKnown RBP26.75■■□□□ 1.87
USP53-203ENST00000507597 SULT6B1Q6IMI4 303 aa26.75■■□□□ 1.87
USP53-203ENST00000507597 POTEAQ6S8J7 498 aa26.75■■□□□ 1.87
USP53-203ENST00000507597 ONECUT3O60422 494 aaPredicted RBP26.74■■□□□ 1.87
USP53-203ENST00000507597 PLEKHG2Q9H7P9 1386 aa26.73■■□□□ 1.87
USP53-203ENST00000507597 FCHSD2O94868 740 aa26.72■■□□□ 1.87
USP53-203ENST00000507597 USHBP1Q8N6Y0 703 aa26.72■■□□□ 1.87
USP53-203ENST00000507597 EXOC5O00471 708 aa26.71■■□□□ 1.87
USP53-203ENST00000507597 NCAPD2Q15021 1401 aa26.7■■□□□ 1.86
USP53-203ENST00000507597 DDB1Q16531 1140 aa26.69■■□□□ 1.86
USP53-203ENST00000507597 SPG7Q9UQ90 795 aa26.69■■□□□ 1.86
USP53-203ENST00000507597 KDRP35968 1356 aa26.69■■□□□ 1.86
USP53-203ENST00000507597 HMOX1P09601 288 aa26.68■■□□□ 1.86
USP53-203ENST00000507597 AMOTQ4VCS5 1084 aa26.68■■□□□ 1.86
USP53-203ENST00000507597 PLEKHO1Q53GL0 409 aaPredicted RBP26.68■■□□□ 1.86
USP53-203ENST00000507597 SEPT12Q8IYM1 358 aa26.68■■□□□ 1.86
USP53-203ENST00000507597 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms