RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 EIF4G3O43432 1585 aaKnown RBP8.52□□□□□ -1.05
CSMD3-208ENST00000497026 VARSP26640 1264 aaKnown RBP8.52□□□□□ -1.05
CSMD3-208ENST00000497026 ARID5BQ14865 1188 aa8.52□□□□□ -1.05
CSMD3-208ENST00000497026 C4orf48Q5BLP8 95 aa8.52□□□□□ -1.05
CSMD3-208ENST00000497026 SENP2Q9HC62 589 aa8.52□□□□□ -1.05
CSMD3-208ENST00000497026 FGD5Q6ZNL6 1462 aa8.51□□□□□ -1.05
CSMD3-208ENST00000497026 WDR97A6NE52 1622 aa8.49□□□□□ -1.05
CSMD3-208ENST00000497026 RAD54L2Q9Y4B4 1467 aa8.49□□□□□ -1.05
CSMD3-208ENST00000497026 NR6A1Q15406 480 aa8.49□□□□□ -1.05
CSMD3-208ENST00000497026 PPP2R2DQ66LE6 453 aa8.49□□□□□ -1.05
CSMD3-208ENST00000497026 FAM174AQ8TBP5 190 aa8.49□□□□□ -1.05
CSMD3-208ENST00000497026 MAGEB6P1A0A0J9YX57 407 aa8.48□□□□□ -1.05
CSMD3-208ENST00000497026 PRKCSHP14314 528 aaPredicted RBP8.48□□□□□ -1.05
CSMD3-208ENST00000497026 SLC16A10Q8TF71 515 aa8.48□□□□□ -1.05
CSMD3-208ENST00000497026 CARD14Q9BXL6 1004 aa8.48□□□□□ -1.05
CSMD3-208ENST00000497026 ATP13A2Q9NQ11 1180 aa8.48□□□□□ -1.05
CSMD3-208ENST00000497026 BIVM-ERCC5R4GMW8 1640 aa8.47□□□□□ -1.05
CSMD3-208ENST00000497026 NNTQ13423 1086 aa8.47□□□□□ -1.05
CSMD3-208ENST00000497026 BPHLQ86WA6 291 aaPredicted RBP8.47□□□□□ -1.05
CSMD3-208ENST00000497026 ARMC2Q8NEN0 867 aa8.47□□□□□ -1.05
CSMD3-208ENST00000497026 EPS8L1Q8TE68 723 aa8.47□□□□□ -1.05
CSMD3-208ENST00000497026 PCMTD1Q96MG8 357 aaPredicted RBP8.47□□□□□ -1.05
CSMD3-208ENST00000497026 SYNJ1O43426 1573 aa8.47□□□□□ -1.05
CSMD3-208ENST00000497026 BMP1P13497 986 aa8.46□□□□□ -1.05
CSMD3-208ENST00000497026 RFC5P40937 340 aa8.46□□□□□ -1.05
CSMD3-208ENST00000497026 KIFC2Q96AC6 838 aa8.46□□□□□ -1.05
CSMD3-208ENST00000497026 HMX1Q9NP08 348 aaPredicted RBP8.46□□□□□ -1.05
CSMD3-208ENST00000497026 TOP2BQ02880 1626 aa8.46□□□□□ -1.06
CSMD3-208ENST00000497026 CAPN5O15484 640 aaPredicted RBP8.46□□□□□ -1.06
CSMD3-208ENST00000497026 USP17L8P0C7I0 530 aa8.46□□□□□ -1.06
CSMD3-208ENST00000497026 NBPF14Q5TI25 921 aa8.46□□□□□ -1.06
CSMD3-208ENST00000497026 TRIM47Q96LD4 638 aa8.46□□□□□ -1.06
CSMD3-208ENST00000497026 SOGA1O94964 1423 aa8.45□□□□□ -1.06
CSMD3-208ENST00000497026 AQRO60306 1485 aaKnown RBP eCLIP8.45□□□□□ -1.06
CSMD3-208ENST00000497026 SNRPBP14678 240 aaKnown RBP8.45□□□□□ -1.06
CSMD3-208ENST00000497026 WRNQ14191 1432 aaPredicted RBP eCLIP8.44□□□□□ -1.06
CSMD3-208ENST00000497026 ADH1CP00326 375 aa8.44□□□□□ -1.06
CSMD3-208ENST00000497026 SUZ12Q15022 739 aaKnown RBP8.44□□□□□ -1.06
CSMD3-208ENST00000497026 SH3BP5LQ7L8J4 393 aa8.44□□□□□ -1.06
CSMD3-208ENST00000497026 ZSCAN1Q8NBB4 408 aa8.44□□□□□ -1.06
CSMD3-208ENST00000497026 SH3RF1Q7Z6J0 888 aa8.43□□□□□ -1.06
CSMD3-208ENST00000497026 FKBPLQ9UIM3 349 aa8.43□□□□□ -1.06
CSMD3-208ENST00000497026 CHD1O14646 1710 aa8.43□□□□□ -1.06
CSMD3-208ENST00000497026 ABCA5Q8WWZ7 1642 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 TDRD9Q8NDG6 1382 aaKnown RBP8.42□□□□□ -1.06
CSMD3-208ENST00000497026 NR3C2P08235 984 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 WDR4P57081 412 aaKnown RBP8.42□□□□□ -1.06
CSMD3-208ENST00000497026 TRIM46Q7Z4K8 759 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 CDK15Q96Q40 435 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 PBRM1Q86U86 1689 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 ABCA10Q8WWZ4 1543 aa8.42□□□□□ -1.06
CSMD3-208ENST00000497026 GRM5P41594 1212 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 LCE2CQ5TA81 110 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 MPNDQ8N594 471 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 ARHGAP9Q9BRR9 750 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 C1QTNF2Q9BXJ5 285 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 GOPCQ9HD26 462 aa8.41□□□□□ -1.06
CSMD3-208ENST00000497026 TIMP2P16035 220 aa8.4□□□□□ -1.06
CSMD3-208ENST00000497026 ERFEQ4G0M1 354 aa8.4□□□□□ -1.06
CSMD3-208ENST00000497026 VASH1Q7L8A9 365 aaPredicted RBP8.4□□□□□ -1.06
CSMD3-208ENST00000497026 ZFAND3Q9H8U3 227 aa8.4□□□□□ -1.06
CSMD3-208ENST00000497026 ZIC2O95409 532 aaPredicted RBP8.39□□□□□ -1.07
CSMD3-208ENST00000497026 FSHRP23945 695 aa8.39□□□□□ -1.07
CSMD3-208ENST00000497026 ITPKCQ96DU7 683 aa8.39□□□□□ -1.07
CSMD3-208ENST00000497026 SNAPC4Q5SXM2 1469 aa8.39□□□□□ -1.07
CSMD3-208ENST00000497026 PDXDC2PQ6P474 469 aa8.38□□□□□ -1.07
CSMD3-208ENST00000497026 NPAS3Q8IXF0 933 aa8.38□□□□□ -1.07
CSMD3-208ENST00000497026 GPKOWQ92917 476 aaPredicted RBP eCLIP8.38□□□□□ -1.07
CSMD3-208ENST00000497026 KLF16Q9BXK1 252 aaPredicted RBP8.38□□□□□ -1.07
CSMD3-208ENST00000497026 GRIN2BQ13224 1484 aa8.38□□□□□ -1.07
CSMD3-208ENST00000497026 GAPVD1Q14C86 1478 aa8.38□□□□□ -1.07
CSMD3-208ENST00000497026 ZBTB33Q86T24 672 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 IRF7Q92985 503 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 OCSTAMPQ9BR26 566 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 NR5A1Q13285 461 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 ZFP42Q96MM3 310 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 TRIM34Q9BYJ4 488 aa8.37□□□□□ -1.07
CSMD3-208ENST00000497026 MAGI1Q96QZ7 1491 aaPredicted RBP8.36□□□□□ -1.07
CSMD3-208ENST00000497026 TMEM259Q4ZIN3 620 aa8.36□□□□□ -1.07
CSMD3-208ENST00000497026 TRMT44Q8IYL2 757 aaKnown RBP8.36□□□□□ -1.07
CSMD3-208ENST00000497026 PURBQ96QR8 312 aaKnown RBP8.36□□□□□ -1.07
CSMD3-208ENST00000497026 NXF1Q9UBU9 619 aaKnown RBP8.36□□□□□ -1.07
CSMD3-208ENST00000497026 PTK2Q05397 1052 aa8.35□□□□□ -1.07
CSMD3-208ENST00000497026 C6orf118Q5T5N4 469 aa8.35□□□□□ -1.07
CSMD3-208ENST00000497026 MRPL14Q6P1L8 145 aaKnown RBP8.35□□□□□ -1.07
CSMD3-208ENST00000497026 ADAM32Q8TC27 787 aa8.35□□□□□ -1.07
CSMD3-208ENST00000497026 SLC10A4Q96EP9 437 aa8.35□□□□□ -1.07
CSMD3-208ENST00000497026 MAP4K5Q9Y4K4 846 aa8.34□□□□□ -1.07
CSMD3-208ENST00000497026 SYNJ2O15056 1496 aa8.34□□□□□ -1.07
CSMD3-208ENST00000497026 ADAMTS12P58397 1594 aa8.34□□□□□ -1.07
CSMD3-208ENST00000497026 SOBPA7XYQ1 873 aa8.33□□□□□ -1.08
CSMD3-208ENST00000497026 GMPRP36959 345 aa8.33□□□□□ -1.08
CSMD3-208ENST00000497026 RAB15P59190 212 aa8.33□□□□□ -1.08
CSMD3-208ENST00000497026 KCTD15Q96SI1 283 aaPredicted RBP8.33□□□□□ -1.08
CSMD3-208ENST00000497026 ZC3H4Q9UPT8 1303 aaKnown RBP8.33□□□□□ -1.08
CSMD3-208ENST00000497026 SCARF1Q14162 830 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 CCDC116Q8IYX3 515 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 RIMBP3CA6NJZ7 1639 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 RIMBP3BA6NNM3 1639 aa8.32□□□□□ -1.08
CSMD3-208ENST00000497026 RIMBP3Q9UFD9 1639 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms