RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 LAMC1P11047 1609 aa11.27□□□□□ -0.61
HPS4-217ENST00000496385 WDR43Q15061 677 aaKnown RBP eCLIP11.27□□□□□ -0.61
HPS4-217ENST00000496385 AMOTL2Q9Y2J4 779 aa11.27□□□□□ -0.61
HPS4-217ENST00000496385 TBX22Q9Y458 520 aa11.27□□□□□ -0.61
HPS4-217ENST00000496385 PTPRUQ92729 1446 aa11.26□□□□□ -0.61
HPS4-217ENST00000496385 HSP90AB1P08238 724 aaKnown RBP11.26□□□□□ -0.61
HPS4-217ENST00000496385 HMGN5P82970 282 aaKnown RBP11.26□□□□□ -0.61
HPS4-217ENST00000496385 PRIMPOLQ96LW4 560 aa11.26□□□□□ -0.61
HPS4-217ENST00000496385 MYOM2P54296 1465 aa11.26□□□□□ -0.61
HPS4-217ENST00000496385 SETBP1Q9Y6X0 1596 aa11.26□□□□□ -0.61
HPS4-217ENST00000496385 SAFB2Q14151 953 aaKnown RBP eCLIP11.26□□□□□ -0.61
HPS4-217ENST00000496385 RWDD1Q9H446 243 aaPredicted RBP11.26□□□□□ -0.61
HPS4-217ENST00000496385 CCDC39Q9UFE4 941 aa11.26□□□□□ -0.61
HPS4-217ENST00000496385 GTF2F1P35269 517 aaKnown RBP eCLIP11.25□□□□□ -0.61
HPS4-217ENST00000496385 MYRIPQ8NFW9 859 aa11.25□□□□□ -0.61
HPS4-217ENST00000496385 PRAG1Q86YV5 1406 aa11.25□□□□□ -0.61
HPS4-217ENST00000496385 SPRYD3Q8NCJ5 442 aa11.25□□□□□ -0.61
HPS4-217ENST00000496385 C14orf93Q9H972 538 aaKnown RBP11.25□□□□□ -0.61
HPS4-217ENST00000496385 TMEM51Q9NW97 253 aa11.25□□□□□ -0.61
HPS4-217ENST00000496385 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.24□□□□□ -0.61
HPS4-217ENST00000496385 NRXN1Q9ULB1 1477 aa11.24□□□□□ -0.61
HPS4-217ENST00000496385 PROSER2Q86WR7 435 aaPredicted RBP11.24□□□□□ -0.61
HPS4-217ENST00000496385 PRDM10Q9NQV6 1147 aa11.24□□□□□ -0.61
HPS4-217ENST00000496385 PDZRN3Q9UPQ7 1066 aa11.24□□□□□ -0.61
HPS4-217ENST00000496385 TRAK1Q9UPV9 953 aa11.24□□□□□ -0.61
HPS4-217ENST00000496385 ASXL1Q8IXJ9 1541 aa11.24□□□□□ -0.61
HPS4-217ENST00000496385 SETD1AO15047 1707 aaKnown RBP11.23□□□□□ -0.61
HPS4-217ENST00000496385 WAPLQ7Z5K2 1190 aa11.23□□□□□ -0.61
HPS4-217ENST00000496385 GPRASP1Q5JY77 1395 aa11.23□□□□□ -0.61
HPS4-217ENST00000496385 XPCQ01831 940 aaPredicted RBP11.22□□□□□ -0.61
HPS4-217ENST00000496385 C14orf37Q86TY3 774 aa11.22□□□□□ -0.61
HPS4-217ENST00000496385 CHD2O14647 1828 aaKnown RBP11.22□□□□□ -0.61
HPS4-217ENST00000496385 BCAR3O75815 825 aa11.22□□□□□ -0.61
HPS4-217ENST00000496385 LTBP4Q8N2S1 1624 aa11.22□□□□□ -0.61
HPS4-217ENST00000496385 TRPM1Q7Z4N2 1603 aa11.21□□□□□ -0.61
HPS4-217ENST00000496385 CC2D1BQ5T0F9 858 aaKnown RBP11.21□□□□□ -0.61
HPS4-217ENST00000496385 DDX49Q9Y6V7 483 aaKnown RBP11.21□□□□□ -0.62
HPS4-217ENST00000496385 TMEM94Q12767 1356 aa11.21□□□□□ -0.62
HPS4-217ENST00000496385 ROBO2Q9HCK4 1378 aa11.21□□□□□ -0.62
HPS4-217ENST00000496385 DIP2AQ14689 1571 aa11.2□□□□□ -0.62
HPS4-217ENST00000496385 YTHDC2Q9H6S0 1430 aaKnown RBP11.2□□□□□ -0.62
HPS4-217ENST00000496385 SLC20A2Q08357 652 aa11.2□□□□□ -0.62
HPS4-217ENST00000496385 CERKQ8TCT0 537 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 PANK3Q9H999 370 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 LRRC7Q96NW7 1537 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 ADGRB1O14514 1584 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 PRAM1Q96QH2 718 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 COG6Q9Y2V7 657 aa11.19□□□□□ -0.62
HPS4-217ENST00000496385 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
HPS4-217ENST00000496385 PPP2R1AP30153 589 aa11.18□□□□□ -0.62
HPS4-217ENST00000496385 MFAP1P55081 439 aaKnown RBP11.18□□□□□ -0.62
HPS4-217ENST00000496385 NPC1L1Q9UHC9 1359 aa11.18□□□□□ -0.62
HPS4-217ENST00000496385 KIAA2012Q0VF49 1180 aa11.18□□□□□ -0.62
HPS4-217ENST00000496385 CHMP4BQ9H444 224 aaKnown RBP11.18□□□□□ -0.62
HPS4-217ENST00000496385 FEZ1Q99689 392 aa11.17□□□□□ -0.62
HPS4-217ENST00000496385 XRN1Q8IZH2 1706 aaKnown RBP11.17□□□□□ -0.62
HPS4-217ENST00000496385 PIK3R4Q99570 1358 aa11.17□□□□□ -0.62
HPS4-217ENST00000496385 NWD1Q149M9 1564 aa11.17□□□□□ -0.62
HPS4-217ENST00000496385 PCDHB15Q9Y5E8 787 aa11.16□□□□□ -0.62
HPS4-217ENST00000496385 XIRP1Q702N8 1843 aaKnown RBP11.16□□□□□ -0.62
HPS4-217ENST00000496385 BAG4O95429 457 aaKnown RBP11.16□□□□□ -0.62
HPS4-217ENST00000496385 TMF1P82094 1093 aa11.16□□□□□ -0.62
HPS4-217ENST00000496385 MINK1Q8N4C8 1332 aaPredicted RBP11.16□□□□□ -0.62
HPS4-217ENST00000496385 PIP4K2BP78356 416 aa11.16□□□□□ -0.62
HPS4-217ENST00000496385 ZSCAN23Q3MJ62 389 aa11.16□□□□□ -0.62
HPS4-217ENST00000496385 K7ELQ4 463 aaPredicted RBP11.15□□□□□ -0.62
HPS4-217ENST00000496385 NUCB2P80303 420 aa11.15□□□□□ -0.62
HPS4-217ENST00000496385 CBX1P83916 185 aa11.15□□□□□ -0.62
HPS4-217ENST00000496385 PANK1Q8TE04 598 aa11.15□□□□□ -0.62
HPS4-217ENST00000496385 RBSNQ9H1K0 784 aa11.15□□□□□ -0.62
HPS4-217ENST00000496385 CPS1P31327 1500 aa11.15□□□□□ -0.62
HPS4-217ENST00000496385 CDK11BP21127 795 aaKnown RBP11.15□□□□□ -0.63
HPS4-217ENST00000496385 ZNF710Q8N1W2 664 aa11.15□□□□□ -0.63
HPS4-217ENST00000496385 TESK2Q96S53 571 aa11.15□□□□□ -0.63
HPS4-217ENST00000496385 KIF3AQ9Y496 699 aa11.15□□□□□ -0.63
HPS4-217ENST00000496385 UBAP1LF5GYI3 381 aa11.14□□□□□ -0.63
HPS4-217ENST00000496385 GABPB1Q06547 395 aaPredicted RBP11.14□□□□□ -0.63
HPS4-217ENST00000496385 ABCC11Q96J66 1382 aa11.14□□□□□ -0.63
HPS4-217ENST00000496385 KIF16BQ96L93 1317 aa11.14□□□□□ -0.63
HPS4-217ENST00000496385 IQSEC2Q5JU85 1478 aa11.14□□□□□ -0.63
HPS4-217ENST00000496385 HDAC1Q13547 482 aaPredicted RBP11.13□□□□□ -0.63
HPS4-217ENST00000496385 FTSJ3Q8IY81 847 aaKnown RBP11.13□□□□□ -0.63
HPS4-217ENST00000496385 SPINK5Q9NQ38 1064 aaPredicted RBP11.13□□□□□ -0.63
HPS4-217ENST00000496385 LRSAM1Q6UWE0 723 aa11.13□□□□□ -0.63
HPS4-217ENST00000496385 KNSTRNQ9Y448 316 aa11.13□□□□□ -0.63
HPS4-217ENST00000496385 KIAA1210Q9ULL0 1709 aa11.13□□□□□ -0.63
HPS4-217ENST00000496385 DISP3Q9P2K9 1392 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 FAM193AP78312 1265 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 PIBF1Q8WXW3 757 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 DNAJC2Q99543 621 aaKnown RBP11.12□□□□□ -0.63
HPS4-217ENST00000496385 CCDC66A2RUB6 948 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 ATP2B3Q16720 1220 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 NALCNQ8IZF0 1738 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 PTCH1Q13635 1447 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 MSH6P52701 1360 aa11.12□□□□□ -0.63
HPS4-217ENST00000496385 ARHGEF28Q8N1W1 1705 aaKnown RBP11.12□□□□□ -0.63
HPS4-217ENST00000496385 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.12□□□□□ -0.63
HPS4-217ENST00000496385 APAF1O14727 1248 aa11.11□□□□□ -0.63
HPS4-217ENST00000496385 RARSP54136 660 aaKnown RBP11.11□□□□□ -0.63
HPS4-217ENST00000496385 PDCL2Q8N4E4 241 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms