RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 FBLN1P23142 703 aa23.23■■□□□ 1.31
HDAC6-235ENST00000495515 CNGB1Q14028 1251 aaPredicted RBP23.23■■□□□ 1.31
HDAC6-235ENST00000495515 IP6K1Q92551 441 aa23.23■■□□□ 1.31
HDAC6-235ENST00000495515 RTL1A6NKG5 1358 aa23.23■■□□□ 1.31
HDAC6-235ENST00000495515 NWD2Q9ULI1 1742 aa23.22■■□□□ 1.31
HDAC6-235ENST00000495515 STRN4Q9NRL3 753 aa23.22■■□□□ 1.31
HDAC6-235ENST00000495515 VPS72Q15906 364 aa23.21■■□□□ 1.31
HDAC6-235ENST00000495515 CCDC9Q9Y3X0 531 aaKnown RBP23.21■■□□□ 1.31
HDAC6-235ENST00000495515 PLCH1Q4KWH8 1693 aa23.21■■□□□ 1.31
HDAC6-235ENST00000495515 CAMTA1Q9Y6Y1 1673 aa23.2■■□□□ 1.3
HDAC6-235ENST00000495515 BLMP54132 1417 aaPredicted RBP23.2■■□□□ 1.3
HDAC6-235ENST00000495515 HOXC9P31274 260 aa23.2■■□□□ 1.3
HDAC6-235ENST00000495515 AXIN2Q9Y2T1 843 aa23.2■■□□□ 1.3
HDAC6-235ENST00000495515 LMO7Q8WWI1 1683 aa23.19■■□□□ 1.3
HDAC6-235ENST00000495515 FLT4P35916 1363 aa23.19■■□□□ 1.3
HDAC6-235ENST00000495515 PPM1GO15355 546 aaPredicted RBP23.19■■□□□ 1.3
HDAC6-235ENST00000495515 CSB-PGBD3P0DP91 1061 aa23.19■■□□□ 1.3
HDAC6-235ENST00000495515 POLKQ9UBT6 870 aa23.19■■□□□ 1.3
HDAC6-235ENST00000495515 COL5A2P05997 1499 aaPredicted RBP23.18■■□□□ 1.3
HDAC6-235ENST00000495515 ATRNO75882 1429 aa23.18■■□□□ 1.3
HDAC6-235ENST00000495515 EMILIN1Q9Y6C2 1016 aa23.18■■□□□ 1.3
HDAC6-235ENST00000495515 RBM6P78332 1123 aaKnown RBP23.17■■□□□ 1.3
HDAC6-235ENST00000495515 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.16■■□□□ 1.3
HDAC6-235ENST00000495515 WDR17Q8IZU2 1322 aa23.16■■□□□ 1.3
HDAC6-235ENST00000495515 RXRBP28702 533 aa23.16■■□□□ 1.3
HDAC6-235ENST00000495515 GJD4Q96KN9 370 aaPredicted RBP23.16■■□□□ 1.3
HDAC6-235ENST00000495515 LTN1O94822 1766 aa23.16■■□□□ 1.3
HDAC6-235ENST00000495515 COL18A1P39060 1754 aa23.15■■□□□ 1.3
HDAC6-235ENST00000495515 TOM1L2Q6ZVM7 507 aa23.15■■□□□ 1.3
HDAC6-235ENST00000495515 ANKRD24Q8TF21 1146 aa23.15■■□□□ 1.3
HDAC6-235ENST00000495515 INSRP06213 1382 aa23.14■■□□□ 1.3
HDAC6-235ENST00000495515 ERBB3P21860 1342 aa23.14■■□□□ 1.3
HDAC6-235ENST00000495515 CDK12Q9NYV4 1490 aaPredicted RBP23.14■■□□□ 1.29
HDAC6-235ENST00000495515 LARP1Q6PKG0 1096 aaKnown RBP23.14■■□□□ 1.29
HDAC6-235ENST00000495515 SMG6Q86US8 1419 aaKnown RBP23.14■■□□□ 1.29
HDAC6-235ENST00000495515 NRAPQ86VF7 1730 aa23.13■■□□□ 1.29
HDAC6-235ENST00000495515 SPATA31A5Q5VU36 1347 aa23.13■■□□□ 1.29
HDAC6-235ENST00000495515 SPATA31A7Q8IWB4 1347 aa23.13■■□□□ 1.29
HDAC6-235ENST00000495515 RALBP1Q15311 655 aa23.13■■□□□ 1.29
HDAC6-235ENST00000495515 CRB1P82279 1406 aa23.12■■□□□ 1.29
HDAC6-235ENST00000495515 HSP90AB2PQ58FF8 381 aa23.12■■□□□ 1.29
HDAC6-235ENST00000495515 LTV1Q96GA3 475 aaPredicted RBP23.12■■□□□ 1.29
HDAC6-235ENST00000495515 SPATA31A1Q5TZJ5 1347 aa23.1■■□□□ 1.29
HDAC6-235ENST00000495515 MTHFSP49914 203 aa23.1■■□□□ 1.29
HDAC6-235ENST00000495515 CARD10Q9BWT7 1032 aa23.1■■□□□ 1.29
HDAC6-235ENST00000495515 NLRP2Q9NX02 1062 aa23.1■■□□□ 1.29
HDAC6-235ENST00000495515 THRAP3Q9Y2W1 955 aaKnown RBP23.1■■□□□ 1.29
HDAC6-235ENST00000495515 PARD3Q8TEW0 1356 aa23.1■■□□□ 1.29
HDAC6-235ENST00000495515 TCP11L2Q8N4U5 519 aa23.09■■□□□ 1.29
HDAC6-235ENST00000495515 USP35Q9P2H5 1018 aa23.09■■□□□ 1.29
HDAC6-235ENST00000495515 PPP2R1AP30153 589 aa23.07■■□□□ 1.28
HDAC6-235ENST00000495515 MAP2P11137 1827 aaKnown RBP23.07■■□□□ 1.28
HDAC6-235ENST00000495515 PEAK1Q9H792 1746 aa23.06■■□□□ 1.28
HDAC6-235ENST00000495515 CFAP53Q96M91 514 aa23.06■■□□□ 1.28
HDAC6-235ENST00000495515 RGS12O14924 1447 aa23.06■■□□□ 1.28
HDAC6-235ENST00000495515 BARGINQ6ZT62 677 aa23.05■■□□□ 1.28
HDAC6-235ENST00000495515 FAM98CQ17RN3 349 aaKnown RBP23.04■■□□□ 1.28
HDAC6-235ENST00000495515 GLI3P10071 1580 aa23.03■■□□□ 1.28
HDAC6-235ENST00000495515 A0A0G2JS52 829 aa23.03■■□□□ 1.28
HDAC6-235ENST00000495515 ONECUT3O60422 494 aaPredicted RBP23.03■■□□□ 1.28
HDAC6-235ENST00000495515 MYT1Q01538 1121 aa23.03■■□□□ 1.28
HDAC6-235ENST00000495515 CDCA7Q9BWT1 371 aaPredicted RBP23.03■■□□□ 1.28
HDAC6-235ENST00000495515 PRKRIP1Q9H875 184 aaPredicted RBP23.03■■□□□ 1.28
HDAC6-235ENST00000495515 RGPD5Q99666 1765 aa23.03■■□□□ 1.28
HDAC6-235ENST00000495515 EIF4A2Q14240 407 aaKnown RBP23.02■■□□□ 1.28
HDAC6-235ENST00000495515 ANP32CO43423 234 aa23.01■■□□□ 1.27
HDAC6-235ENST00000495515 MYBBP1AQ9BQG0 1328 aaKnown RBP23.01■■□□□ 1.27
HDAC6-235ENST00000495515 FAM208AQ9UK61 1670 aaKnown RBP23■■□□□ 1.27
HDAC6-235ENST00000495515 DIAPH1O60610 1272 aaKnown RBP23■■□□□ 1.27
HDAC6-235ENST00000495515 NBPF6Q5VWK0 638 aa23■■□□□ 1.27
HDAC6-235ENST00000495515 SEPT12Q8IYM1 358 aa23■■□□□ 1.27
HDAC6-235ENST00000495515 NBPF4Q96M43 638 aa23■■□□□ 1.27
HDAC6-235ENST00000495515 IL2RBP14784 551 aa22.97■■□□□ 1.27
HDAC6-235ENST00000495515 IL13P35225 146 aa22.97■■□□□ 1.27
HDAC6-235ENST00000495515 EYA1Q99502 592 aa22.97■■□□□ 1.27
HDAC6-235ENST00000495515 UPF1Q92900 1129 aaKnown RBP eCLIP22.96■■□□□ 1.27
HDAC6-235ENST00000495515 NUDCQ9Y266 331 aa22.96■■□□□ 1.27
HDAC6-235ENST00000495515 RAPGEF4Q8WZA2 1011 aa22.95■■□□□ 1.26
HDAC6-235ENST00000495515 IGSF1Q8N6C5 1336 aa22.94■■□□□ 1.26
HDAC6-235ENST00000495515 USHBP1Q8N6Y0 703 aa22.94■■□□□ 1.26
HDAC6-235ENST00000495515 DDB1Q16531 1140 aa22.93■■□□□ 1.26
HDAC6-235ENST00000495515 TATP17735 454 aaPredicted RBP22.92■■□□□ 1.26
HDAC6-235ENST00000495515 PDE3BQ13370 1112 aa22.92■■□□□ 1.26
HDAC6-235ENST00000495515 DISP2A7MBM2 1401 aa22.91■■□□□ 1.26
HDAC6-235ENST00000495515 EXOC5O00471 708 aa22.91■■□□□ 1.26
HDAC6-235ENST00000495515 U2SURPO15042 1029 aaKnown RBP22.91■■□□□ 1.26
HDAC6-235ENST00000495515 COL3A1P02461 1466 aaPredicted RBP22.91■■□□□ 1.26
HDAC6-235ENST00000495515 NCAPD2Q15021 1401 aa22.91■■□□□ 1.26
HDAC6-235ENST00000495515 KRT27Q7Z3Y8 459 aa22.9■■□□□ 1.26
HDAC6-235ENST00000495515 THSD7AQ9UPZ6 1657 aa22.9■■□□□ 1.26
HDAC6-235ENST00000495515 SULT6B1Q6IMI4 303 aa22.89■■□□□ 1.25
HDAC6-235ENST00000495515 PLEKHG2Q9H7P9 1386 aa22.86■■□□□ 1.25
HDAC6-235ENST00000495515 OVOS2A0A0G2JMS6 1433 aa22.85■■□□□ 1.25
HDAC6-235ENST00000495515 U2AF1L5P0DN76 240 aaPredicted RBP22.85■■□□□ 1.25
HDAC6-235ENST00000495515 U2AF1Q01081 240 aaKnown RBP eCLIP22.85■■□□□ 1.25
HDAC6-235ENST00000495515 ZCRB1Q8TBF4 217 aaKnown RBP22.85■■□□□ 1.25
HDAC6-235ENST00000495515 KDRP35968 1356 aa22.85■■□□□ 1.25
HDAC6-235ENST00000495515 TNS2Q63HR2 1409 aa22.84■■□□□ 1.25
HDAC6-235ENST00000495515 RGPD2P0DJD1 1756 aa22.84■■□□□ 1.25
HDAC6-235ENST00000495515 MEGF6O75095 1541 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 879.1 ms