RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 NLRP5P59047 1200 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 MC1RQ01726 317 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 ID2Q02363 134 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 GOLGA8DPQ0D2H9 430 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 GRIK3Q13003 919 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 CUL4AQ13619 759 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 CAPSQ13938 189 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 ALG11Q2TAA5 492 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 COL28A1Q2UY09 1125 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 RILPL1Q5EBL4 403 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 C6orf10Q5SRN2 563 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TXNDC8Q6A555 127 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 KIAA1161Q6NSJ0 714 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TSSK4Q6SA08 328 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 KDELC2Q7Z4H8 507 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 SERPINA11Q86U17 422 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TBC1D26Q86UD7 250 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 GPSM1Q86YR5 675 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 FAM217AQ8IXS0 508 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TMEM170AQ8WVE7 144 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 ZC3HAV1LQ96H79 300 aaKnown RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 SIGLEC11Q96RL6 698 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 SIN3AQ96ST3 1273 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 YME1L1Q96TA2 773 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 H2AFJQ9BTM1 129 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TUBB6Q9BUF5 446 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 SYNCQ9H7C4 482 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 FBRSL1Q9HCM7 1045 aaKnown RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 SLC6A13Q9NSD5 602 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 HCFC1R1Q9NWW0 138 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 EHD2Q9NZN4 543 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 NRBP1Q9UHY1 535 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 SLCO3A1Q9UIG8 710 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 AGO2Q9UKV8 859 aaKnown RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 PCDHGB4Q9UN71 923 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.32□□□□□ -1.72
VPS29-205ENST00000548539 FAM96BQ9Y3D0 163 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 ADAM18Q9Y3Q7 739 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 LYVE1Q9Y5Y7 322 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 ZNF335Q9H4Z2 1342 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 A0A096LPK6 155 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 A0A1W2PQF6 199 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 hCG_1807616A0A1W2PRN6 198 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 TTC36A6NLP5 189 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 HSPB2A8KAH6 182 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 HSPB6O14558 160 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 VILLO15195 856 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 BCAR3O75815 825 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 TFP02787 698 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 IRF1P10914 325 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 KRT10P13645 584 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 IL7RP16871 459 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 ZNF8P17098 575 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 PTPN2P17706 415 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 TM4SF1P30408 202 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 SNX16P57768 344 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 CREB5Q02930 508 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 DAZAP2Q15038 168 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 HSPB2Q16082 182 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 DPCR1Q3MIW9 517 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 PXDC1Q5TGL8 231 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 KLHL35Q6PF15 583 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 NCEH1Q6PIU2 408 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 FAM83HQ6ZRV2 1179 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 ENOSF1Q7L5Y1 443 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 SZRD1Q7Z422 152 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 NOXA1Q86UR1 476 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 FAM185AQ8N0U4 392 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 C17orf53Q8N3J3 647 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 SRBD1Q8N5C6 995 aaKnown RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 SCFD2Q8WU76 684 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 PSPC1Q8WXF1 523 aaKnown RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 ARHGEF2Q92974 986 aaKnown RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 B3GNT4Q9C0J1 378 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 CCDC68Q9H2F9 335 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 PRKRIP1Q9H875 184 aaPredicted RBP4.31□□□□□ -1.72
VPS29-205ENST00000548539 KIF9Q9HAQ2 790 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 NSMCE4AQ9NXX6 385 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 CLIC5Q9NZA1 410 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 NCKIPSDQ9NZQ3 722 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 MSRB1Q9NZV6 116 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 ZNF112Q9UJU3 913 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 COG5Q9UP83 839 aa4.31□□□□□ -1.72
VPS29-205ENST00000548539 A0A0G2JK05 382 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 MYO1GB0I1T2 1018 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 KLRF2D3W0D1 207 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 BCAT2O15382 392 aaPredicted RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 PRPF4O43172 522 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS29-205ENST00000548539 TIMM44O43615 452 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 PAGE4O60829 102 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 CLDN7O95471 211 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 HSP90AA1P07900 732 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 PORP16435 677 aaPredicted RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 ITGAXP20702 1163 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 RYKP34925 604 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 GARSP41250 739 aaKnown RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 PIP4K2AP48426 406 aaPredicted RBP4.3□□□□□ -1.72
VPS29-205ENST00000548539 NUCB1Q02818 461 aa4.3□□□□□ -1.72
VPS29-205ENST00000548539 FGFBP1Q14512 234 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms