RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 UGT2A1Q9Y4X1 527 aa5.09□□□□□ -1.59
VPS13D-214ENST00000620676 PLD2O14939 933 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 ENDOD1O94919 500 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 TXNP10599 105 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PABPC1P11940 636 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 RPS3P23396 243 aaKnown RBP eCLIP5.09□□□□□ -1.64e-6■■■■■ 40.4
VPS13D-214ENST00000620676 ACTR3P61158 418 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PRKAA1Q13131 559 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 RAB39AQ14964 217 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 ADGRA1Q86SQ6 560 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PIH1D2Q8WWB5 315 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 TADA1Q96BN2 335 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PNMA5Q96PV4 448 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 NARSO43776 548 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 KLRC4O43908 158 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 SFNP31947 248 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PRELPP51888 382 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 LAPTM4AQ15012 233 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 REV1Q9UBZ9 1251 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 CNTNAP5Q8WYK1 1306 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PRAMEF33A0A0G2JMD5 474 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 ISPDA4D126 451 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 PRAMEF10O60809 474 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 XIAPP98170 497 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 POU6F1Q14863 301 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 STXBP2Q15833 593 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 FGD3Q5JSP0 725 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 DUS1LQ6P1R4 473 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 FBXL19Q6PCT2 694 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 LNX2Q8N448 690 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 KIF12Q96FN5 646 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 GMIPQ9P107 970 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 KLQ9UEF7 1012 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 IQGAP2Q13576 1575 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 RFX7Q2KHR2 1363 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 ARIH2O95376 493 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 IL2RBP14784 551 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 CHI3L1P36222 383 aaPredicted RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 MARSP56192 900 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 CPSF1Q10570 1443 aaKnown RBP5.09□□□□□ -1.6
VPS13D-214ENST00000620676 THAP5Q7Z6K1 395 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 UNC5BQ8IZJ1 945 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 TEKT5Q96M29 485 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 CDADC1Q9BWV3 514 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 GPSM3Q9Y4H4 160 aa5.09□□□□□ -1.6
VPS13D-214ENST00000620676 CFAP65Q6ZU64 1925 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 URB2Q14146 1524 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 A0A087WZ62 844 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 C3orf70A6NLC5 250 aaPredicted RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 TTLL8A6PVC2 850 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CXorf49A8MYA2 514 aaPredicted RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CCNDBP1O95273 360 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 HMGCRP04035 888 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 VEPH1Q14D04 833 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CPNE9Q8IYJ1 553 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 MCOLN2Q8IZK6 566 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 BARD1Q99728 777 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 MYOCQ99972 504 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 GANQ9H2C0 597 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ALG9Q9H6U8 611 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ZDHHC18Q9NUE0 388 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.08□□□□□ -1.64e-7■■□□□ 13.1
VPS13D-214ENST00000620676 ATP10AO60312 1499 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ZBTB5O15062 677 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 FOXP2O15409 715 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 SGTAO43765 313 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 JCHAINP01591 159 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 HNF4AP41235 474 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 MAZP56270 477 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CSTF3Q12996 717 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ACVR2BQ13705 512 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 UGP2Q16851 508 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 TRIM71Q2Q1W2 868 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 GTF3C2Q8WUA4 911 aaPredicted RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 JPH3Q8WXH2 748 aaPredicted RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 SORBS1Q9BX66 1292 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 RAVER2Q9HCJ3 691 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 PLLPQ9Y342 182 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 SHANK2Q9UPX8 1470 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 A0A1B0GW55 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L2P0CJ85 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L3P0CJ86 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L4P0CJ87 422 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L5P0CJ88 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L6P0CJ89 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DUX4L7P0CJ90 424 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ICAM3P32942 547 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CCNA1P78396 465 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 NCF4Q15080 339 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CCNYL2Q5T2Q4 361 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 SH3PXD2AQ5TCZ1 1133 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 FAM91A1Q658Y4 838 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 REP15Q6BDI9 236 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CXorf57Q6NSI4 855 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 HDAC10Q969S8 669 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 GMCL1Q96IK5 515 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 FICDQ9BVA6 458 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 NANSQ9NR45 359 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 HPF1Q9NWY4 346 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms