RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 BTN2A2Q8WVV5 523 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 TSACCQ96A04 125 aaPredicted RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 PNPLA2Q96AD5 504 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 VOPP1Q96AW1 172 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 CENPTQ96BT3 561 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ARSGQ96EG1 525 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ALG14Q96F25 216 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 LENG8Q96PV6 779 aaPredicted RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 HAPLN3Q96S86 360 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 SLC25A23Q9BV35 468 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 NUDT9Q9BW91 350 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 C1QTNF2Q9BXJ5 285 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 EDEM3Q9BZQ6 932 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 SLC13A1Q9BZW2 595 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 INTS2Q9H0H0 1204 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 ZHX3Q9H4I2 956 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 RUBCNLQ9H714 662 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 PNPLA8Q9NP80 782 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 SLAMF7Q9NQ25 335 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 MBNL1Q9NR56 388 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 LRIT1Q9P2V4 623 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 COPG2Q9UBF2 871 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 IPO11Q9UI26 975 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 XPO7Q9UIA9 1087 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 STRIP2Q9ULQ0 834 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 OSGIN2Q9Y236 505 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 ITM2BQ9Y287 266 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 HBS1LQ9Y450 684 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 FADS3Q9Y5Q0 445 aa4.9□□□□□ -1.63
USP4-209ENST00000475873 KLF2Q9Y5W3 355 aaPredicted RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 ANK3Q12955 4377 aaKnown RBP4.9□□□□□ -1.63
USP4-209ENST00000475873 NCOA6Q14686 2063 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 C1QTNF3-AMACRE9PGA6 284 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 K7ERQ8 282 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 TULP2O00295 520 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 KPNA3O00505 521 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 ALOX15BO15296 676 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 GRID2O43424 1007 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ACSL4O60488 711 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CEACAM4O75871 244 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PRPF6O94906 941 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 VNN1O95497 513 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 LATS1O95835 1130 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 MT-CO1P00395 513 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 SLFN14P0C7P3 912 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 COX6B1P14854 86 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PNLIPP16233 465 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PDGFRAP16234 1089 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CAPN3P20807 821 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PDCP20941 246 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 BMP6P22004 513 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 HTR1EP28566 365 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 GJB2P29033 226 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 HOXD13P35453 343 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 DLSTP36957 453 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 KIR3DL1P43629 444 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 THOP1P52888 689 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 MAZP56270 477 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 YWHAGP61981 247 aaKnown RBP eCLIP4.89□□□□□ -1.63
USP4-209ENST00000475873 PPARDQ03181 441 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ADAM9Q13443 819 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CDH18Q13634 790 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 LAMB3Q13751 1172 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 NR1D2Q14995 579 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 DLG2Q15700 870 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ZNF630Q2M218 657 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 EDRF1Q3B7T1 1238 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 KMT5BQ4FZB7 885 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 RAB41Q5JT25 222 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 DCAF12Q5T6F0 453 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 L1TD1Q5T7N2 865 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 CXorf57Q6NSI4 855 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 FOXR2Q6PJQ5 311 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 MACC1Q6ZN28 852 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 BNC2Q6ZN30 1099 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 ERN2Q76MJ5 926 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 TAOK1Q7L7X3 1001 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 TADA2BQ86TJ2 420 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 FJX1Q86VR8 437 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 C17orf82Q86X59 251 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 CIR1Q86X95 450 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 FAM129CQ86XR2 697 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 HID1Q8IV36 788 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 NRSN1Q8IZ57 195 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 GPD1LQ8N335 351 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 HJURPQ8NCD3 748 aaPredicted RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 AGBL5Q8NDL9 886 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 OR2A12Q8NGT7 310 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CCL4L1Q8NHW4 92 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 EDEM1Q92611 657 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 NRGNQ92686 78 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 HVCN1Q96D96 273 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 PDXPQ96GD0 296 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 TNIP3Q96KP6 325 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CDK5RAP1Q96SZ6 601 aaKnown RBP4.89□□□□□ -1.63
USP4-209ENST00000475873 EFHD1Q9BUP0 239 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 ASPSCR1Q9BZE9 553 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 CXXC4Q9H2H0 198 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 VRTNQ9H8Y1 702 aa4.89□□□□□ -1.63
USP4-209ENST00000475873 SEMA3GQ9NS98 782 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms