RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 BNIP3LO60238 219 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 USP12O75317 370 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 CSO75390 466 aaKnown RBP13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ZMPSTE24O75844 475 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ERBB2P04626 1255 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 SLC9A1P19634 815 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 RRM1P23921 792 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ITGB7P26010 798 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 RECQLP46063 649 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-227ENST00000485102 RABIFP47224 123 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 GABRB2P47870 512 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 NEK3P51956 506 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 CLDN2P57739 230 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 GABREP78334 506 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 FZD2Q14332 565 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ISXQ2M1V0 245 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 SKOR2Q2VWA4 1001 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-227ENST00000485102 PTPN20Q4JDL3 420 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ARSIQ5FYB1 569 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 SEL1L3Q68CR1 1132 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 RETSATQ6NUM9 610 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 C22orf39Q6P5X5 142 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 GJB7Q6PEY0 223 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 GBP6Q6ZN66 633 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 DPY19L3Q6ZPD9 716 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 TMC6Q7Z403 805 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 PCDH20Q8N6Y1 951 aaKnown RBP13.29□□□□□ -0.28
HDAC6-227ENST00000485102 KLF6Q99612 283 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-227ENST00000485102 MYOCQ99972 504 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 CRACR2AQ9BSW2 395 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 C1QTNF2Q9BXJ5 285 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 ABCG4Q9H172 646 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 FZD3Q9NPG1 666 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 THSD1Q9NS62 852 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 STAP1Q9ULZ2 295 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 CTNND2Q9UQB3 1225 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 PCDHGA8Q9Y5G5 932 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 FADS3Q9Y5Q0 445 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 CHD5Q8TDI0 1954 aa13.29□□□□□ -0.28
HDAC6-227ENST00000485102 EME2A4GXA9 379 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 POM121BA6NF01 834 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 H3BM21 787 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 LEFTY1O75610 366 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 ZIC2O95409 532 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 PAK4O96013 591 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 ADRB3P13945 408 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 L1CAMP32004 1257 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 CDH5P33151 784 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 KRT9P35527 623 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 GGCXP38435 758 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 USP8P40818 1118 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 MLLT3P42568 568 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 SERPINH1P50454 418 aaKnown RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 STX17P56962 302 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 FGL2Q14314 439 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 ARHGAP44Q17R89 818 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 EXOC3L4Q17RC7 722 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 SLC25A52Q3SY17 297 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 BNIPLQ7Z465 357 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 PARGQ86W56 976 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 DENND6BQ8NEG7 585 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 ZNF548Q8NEK5 533 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 KCNE4Q8WWG9 221 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 COL26A1Q96A83 441 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 RAB7BQ96AH8 199 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 ISG20Q96AZ6 181 aaKnown RBP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 TBATAQ96M53 351 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 SLC46A1Q96NT5 459 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 HAPLN3Q96S86 360 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 HEPHQ9BQS7 1158 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 RETREG1Q9H6L5 497 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 DNAJC28Q9NX36 388 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC6-227ENST00000485102 KIF26BQ2KJY2 2108 aa13.28□□□□□ -0.28
HDAC6-227ENST00000485102 COL27A1Q8IZC6 1860 aaPredicted RBP13.27□□□□□ -0.28
HDAC6-227ENST00000485102 TSPAN6O43657 245 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 TCEA3O75764 348 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 PON1P27169 355 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 OR1E1P30953 314 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 CLCN1P35523 988 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 BPIFB4P59827 614 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 PFN3P60673 137 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 TAF1BQ53T94 588 aaPredicted RBP13.27□□□□□ -0.29
HDAC6-227ENST00000485102 CARD16Q5EG05 197 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 LINGO4Q6UY18 593 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 ARCQ7LC44 396 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 PASD1Q8IV76 773 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 FAM71AQ8IYT1 594 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 WDR48Q8TAF3 677 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 IFI44Q8TCB0 444 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 MAPK15Q8TD08 544 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 TTC9Q92623 222 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 CCDC97Q96F63 343 aaPredicted RBP13.27□□□□□ -0.29
HDAC6-227ENST00000485102 MPP6Q9NZW5 540 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 PPARGC1AQ9UBK2 798 aaKnown RBP13.27□□□□□ -0.29
HDAC6-227ENST00000485102 RWDD2AQ9UIY3 292 aa13.27□□□□□ -0.29
HDAC6-227ENST00000485102 A0A1W2PNU3 283 aaPredicted RBP13.26□□□□□ -0.29
HDAC6-227ENST00000485102 CDRT15L2A8MXV6 281 aa13.26□□□□□ -0.29
HDAC6-227ENST00000485102 J3QKU1 62 aa13.26□□□□□ -0.29
HDAC6-227ENST00000485102 FOXN3O00409 490 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms