RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NAPEPLDQ6IQ20 393 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 EPGNQ6UW88 154 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 BEND5Q7L4P6 421 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 SCN4BQ8IWT1 228 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 KBTBD2Q8IY47 623 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MYEOVQ96EZ4 313 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 OXSMQ9NWU1 459 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MYO16Q9Y6X6 1858 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 CNTN5O94779 1100 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 JUNP05412 331 aaKnown RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 CCR1P32246 355 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 CSE1LP55060 971 aaKnown RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 TSTD2Q5T7W7 516 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 SCUBE1Q8IWY4 988 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 RSRC1Q96IZ7 334 aaKnown RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 PPP1R36Q96LQ0 422 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 CDH19Q9H159 772 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 RBM22Q9NW64 420 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 MTF2Q9Y483 593 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 FRMPD3Q5JV73 1810 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 J3KR12 359 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 HAPLN1P10915 354 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF135P52742 658 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 BRMS1LQ5PSV4 323 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 SH3RF2Q8TEC5 729 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF333Q96JL9 665 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 TREX1Q9NSU2 369 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 DSEQ9UL01 958 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 APOBEC2Q9Y235 224 aaKnown RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 NOD1Q9Y239 953 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 SLC1A2P43004 574 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF33AQ06730 810 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 MSLNQ13421 630 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 CNGA3Q16281 694 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 ALFQ53S48 1182 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 PCID2Q5JVF3 399 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 SNX30Q5VWJ9 437 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 PDPK2PQ6A1A2 396 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 RANBP10Q6VN20 620 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 TFAP2DQ7Z6R9 452 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 CNTN4Q8IWV2 1026 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 LSMEM2Q8N112 164 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 ACE2Q9BYF1 805 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 TRPV6Q9H1D0 765 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 WDR55Q9H6Y2 383 aaPredicted RBP13.57□□□□□ -0.24
CCDC3-202ENST00000378839 HCSTQ9UBK5 93 aa13.57□□□□□ -0.24
CCDC3-202ENST00000378839 E9PBE3 544 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 TIMM44O43615 452 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 KLHL41O60662 606 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 MAXP61244 160 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 TSPY1Q01534 308 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 DSC1Q08554 894 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 PRPSAP1Q14558 356 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 ANO4Q32M45 955 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 FAM26DQ5JW98 314 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 THEM5Q8N1Q8 247 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 RTL3Q8N8U3 475 aaKnown RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 SLC39A13Q96H72 371 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 KLHL5Q96PQ7 755 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 SIKE1Q9BRV8 207 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 RHOJQ9H4E5 214 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 TASP1Q9H6P5 420 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 PCDHB8Q9UN66 801 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 GOLGA8QA0A0J9YX86 632 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 LOC100653049A0A140TA62 436 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 GOLGA8OA6NCC3 632 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 GOLGA8NF8WBI6 632 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 INPPL1O15357 1258 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 KRT34O76011 436 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 PRKAR2AP13861 404 aaKnown RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 TYMPP19971 482 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 CDK7P50613 346 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 MLLT6P55198 1093 aaPredicted RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 USP10Q14694 798 aaKnown RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 PCSK7Q16549 785 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 ANO7Q6IWH7 933 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 RNF111Q6ZNA4 994 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 FRMD7Q6ZUT3 714 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 COLGALT2Q8IYK4 626 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 FSTL5Q8N475 847 aaPredicted RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 PPP4R1Q8TF05 950 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 NXNL1Q96CM4 212 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 OMDQ99983 421 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 C1orf21Q9H246 121 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 RNF186Q9NXI6 227 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 RUVBL2Q9Y230 463 aaKnown RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 AAR2Q9Y312 384 aaKnown RBP13.56□□□□□ -0.24
CCDC3-202ENST00000378839 TCAF1Q9Y4C2 921 aa13.56□□□□□ -0.24
CCDC3-202ENST00000378839 DCXO43602 365 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 TRIM13O60858 407 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 MMP2P08253 660 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 NCF2P19878 526 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CYP2C18P33260 490 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 KDELC1Q6UW63 502 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 ZYG11AQ6WRX3 759 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 RAPH1Q70E73 1250 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 TDRD5Q8NAT2 981 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CRISPLD1Q9H336 500 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 SPC25Q9HBM1 224 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 GMIPQ9P107 970 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms