RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MZB1Q8WU39 189 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 NSMCE1Q8WV22 266 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 CEP295NLQ96MC4 621 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 MOCS1Q9NZB8 636 aa16.75■□□□□ 0.27
USP4-201ENST00000265560 NDUFAB1O14561 156 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 POLBP06746 335 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 PGAM1P18669 254 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 WDR4P57081 412 aaKnown RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 CDH17Q12864 832 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ZNF235Q14590 738 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 PTPRRQ15256 657 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SLC1A5Q15758 541 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ZKSCAN8Q15776 578 aaPredicted RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 PARP15Q460N3 678 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 NAPEPLDQ6IQ20 393 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 POTEHQ6S545 545 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 GRASPQ7Z6J2 395 aaPredicted RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 SLC26A11Q86WA9 606 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SPOCK2Q92563 424 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 YBX2Q9Y2T7 364 aaKnown RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 AAR2Q9Y312 384 aaKnown RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 GBF1Q92538 1859 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 DENND4CQ5VZ89 1909 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 HMX2A2RU54 273 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 RFXAPO00287 272 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 MT-CO1P00395 513 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 MT-ND3P03897 115 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 MMP2P08253 660 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 PRKCHP24723 683 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 CCT5P48643 541 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SCNN1BP51168 640 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 CDH4P55283 916 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 PTPRCAPQ14761 206 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SHKBP1Q8TBC3 707 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ZSWIM3Q96MP5 696 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SLC17A7Q9P2U7 560 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SSX2IPQ9Y2D8 614 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 PRAMEF11O60813 436 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ANXA9O76027 345 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 MAGEA10P43363 369 aaPredicted RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 GALNT3Q14435 633 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ANKRD20A4Q4UJ75 823 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 CXorf57Q6NSI4 855 aaKnown RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 RASSF3Q86WH2 238 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 ZNF276Q8N554 614 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 MYLIPQ8WY64 445 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 CCT8L2Q96SF2 557 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 CNOT10Q9H9A5 744 aaKnown RBP16.74■□□□□ 0.27
USP4-201ENST00000265560 GRID1Q9ULK0 1009 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 SH3BP1Q9Y3L3 701 aa16.74■□□□□ 0.27
USP4-201ENST00000265560 K7ERQ8 282 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 TNRC18O15417 2968 aaPredicted RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 VIMP08670 466 aaKnown RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 MAPKAPK2P49137 400 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 OXCT1P55809 520 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 ZNF33AQ06730 810 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 IL10RBQ08334 325 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 ZSCAN26Q16670 478 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 ESRP1Q6NXG1 681 aaKnown RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 OR6K2Q8NGY2 324 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 PKNOX2Q96KN3 472 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 EPN3Q9H201 632 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 C20orf96Q9NUD7 363 aaPredicted RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 MTCL1Q9Y4B5 1905 aaKnown RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 A0A1B0GVM2 712 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 TCAF2A6NFQ2 919 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 FAM159BA6NKW6 160 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 LPXNO60711 386 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 CLDN11O75508 207 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 SLC4A1P02730 911 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 RHOP08100 348 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 CREMQ03060 361 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 TMC5Q6UXY8 1006 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 RIBC1Q8N443 379 aaPredicted RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 ARRDC2Q8TBH0 407 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 PHOSPHO2Q8TCD6 241 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 THOC1Q96FV9 657 aaKnown RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 IMP4Q96G21 291 aaKnown RBP16.73■□□□□ 0.27
USP4-201ENST00000265560 CERS2Q96G23 380 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 SLC25A51Q9H1U9 297 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 ZFATQ9P243 1243 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 VPS28Q9UK41 221 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 KCTD3Q9Y597 815 aa16.73■□□□□ 0.27
USP4-201ENST00000265560 ZCWPW2A0A1B0GU75 182 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 FAM47DPA6NHR8 397 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 CACNG3O60359 315 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 SPAG6O75602 509 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 SAT1P21673 171 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 IRX4P78413 519 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 CDH18Q13634 790 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 CDHR3Q6ZTQ4 885 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 TDRD5Q8NAT2 981 aaKnown RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 IARS2Q9NSE4 1012 aaKnown RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 NKIRAS1Q9NYS0 192 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 IRAK3Q9Y616 596 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 CHD5Q8TDI0 1954 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 ANKRD65E5RJM6 399 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 LEFTY2O00292 366 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 VAPBO95292 243 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 GEMP55040 296 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms