RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SRCP12931 536 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 AKT2P31751 481 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 CHRNA3P32297 505 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 CFHR1Q03591 330 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 ZNF284Q2VY69 593 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 HORMAD1Q86X24 394 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 ARRDC3Q96B67 414 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 NOX5Q96PH1 765 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 CPXM1Q96SM3 734 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 SIK2Q9H0K1 926 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 OSBPL2Q9H1P3 480 aa19.89■□□□□ 0.77
CLN3-262ENST00000637699 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-262ENST00000637699 TENM4Q6N022 2769 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 K7ERQ8 282 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 RNF103O00237 685 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 SNAP91O60641 907 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 USP12O75317 370 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PAGE1O75459 146 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 CLDN11O75508 207 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PCDH8O95206 1070 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 GLI1P08151 1106 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 HNRNPA2B1P22626 353 aaKnown RBP19.88■□□□□ 0.77
CLN3-262ENST00000637699 USP8P40818 1118 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PPP1R2P41236 205 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PCBP4P57723 403 aaKnown RBP19.88■□□□□ 0.77
CLN3-262ENST00000637699 GABREP78334 506 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 TAF1BQ53T94 588 aaPredicted RBP19.88■□□□□ 0.77
CLN3-262ENST00000637699 ZNF542PQ5EBM4 170 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 EFHC1Q5JVL4 640 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 CDCP2Q5VXM1 449 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 NEK5Q6P3R8 708 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 GJB7Q6PEY0 223 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PASD1Q8IV76 773 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 WDTC1Q8N5D0 677 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 OR2A12Q8NGT7 310 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PPP1R13BQ96KQ4 1090 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 APOLD1Q96LR9 279 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 ZNF578Q96N58 590 aaPredicted RBP19.88■□□□□ 0.77
CLN3-262ENST00000637699 DEPDC7Q96QD5 511 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 DYRK4Q9NR20 520 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 CTNND2Q9UQB3 1225 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 HS3ST2Q9Y278 367 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 TBC1D30Q9Y2I9 924 aa19.88■□□□□ 0.77
CLN3-262ENST00000637699 PPP1R3GB7ZBB8 358 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 HSF2BPO75031 334 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CNTN5O94779 1100 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 ALPPL2P10696 532 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 RRM1P23921 792 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CDH4P55283 916 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 STX17P56962 302 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 KRT83P78385 493 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CCDC15Q0P6D6 951 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 BROXQ5VW32 411 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 SEL1L3Q68CR1 1132 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 OR6B2Q6IFH4 312 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 SLC22A18ASQ8N1D0 253 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CHST14Q8NCH0 376 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 COL26A1Q96A83 441 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 HIC2Q96JB3 615 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CCDC114Q96M63 670 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 TIGD1Q96MW7 591 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 PSMB7Q99436 277 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 ABCG4Q9H172 646 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 CPNE5Q9HCH3 593 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 ASNSD1Q9NWL6 643 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 DNAJC28Q9NX36 388 aa19.87■□□□□ 0.77
CLN3-262ENST00000637699 ZFR2Q9UPR6 939 aaKnown RBP19.87■□□□□ 0.77
CLN3-262ENST00000637699 BICDL2A1A5D9 508 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 M0QYT0 321 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 ERVH48-1M5A8F1 160 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 SMAD6O43541 496 aaKnown RBP19.86■□□□□ 0.77
CLN3-262ENST00000637699 CSO75390 466 aaKnown RBP19.86■□□□□ 0.77
CLN3-262ENST00000637699 NEBLO76041 1014 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 GNA14O95837 355 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 RHOCP08134 193 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 BMP6P22004 513 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 ARHGAP44Q17R89 818 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 ARSIQ5FYB1 569 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 ARHGAP40Q5TG30 622 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 LINGO4Q6UY18 593 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 GCNT7Q6ZNI0 430 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 Q6ZSR6 202 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 FAM183BPQ6ZVS7 135 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 LSMEM2Q8N112 164 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 TMIEQ8NEW7 156 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 GRIN3AQ8TCU5 1115 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 CRACR2AQ9BSW2 395 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 C2orf49Q9BVC5 232 aaPredicted RBP19.86■□□□□ 0.77
CLN3-262ENST00000637699 TNKS2Q9H2K2 1166 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 NLGN3Q9NZ94 848 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 VPS51Q9UID3 782 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 SNX10Q9Y5X0 201 aa19.86■□□□□ 0.77
CLN3-262ENST00000637699 NEMP2A6NFY4 417 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 BECN2A8MW95 431 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 PRNPP04156 253 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 LSSP48449 732 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 TMPRSS3P57727 454 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 MTA1Q13330 715 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 ALFQ53S48 1182 aa19.85■□□□□ 0.77
CLN3-262ENST00000637699 C11orf57Q6ZUT1 292 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms