RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 RAG1P15918 1043 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 NPR3P17342 541 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 WARSP23381 471 aaKnown RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 AKAP5P24588 427 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 HOXC8P31273 242 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 CSRP3P50461 194 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 AQP4P55087 323 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 CDC42EP1Q00587 391 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 PPIDQ08752 370 aaKnown RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 SEMA3BQ13214 749 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 DLG2Q15700 870 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 TCHHL1Q5QJ38 904 aaPredicted RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 SYPL2Q5VXT5 272 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 PDZD4Q76G19 769 aaPredicted RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 ARHGAP18Q8N392 663 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 TDRD5Q8NAT2 981 aaKnown RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 URGCPQ8TCY9 931 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 SREK1Q8WXA9 508 aaKnown RBP16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 NTAN1Q96AB6 310 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 AGAP3Q96P47 875 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 SLC9A7Q96T83 725 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 CAB39LQ9H9S4 337 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 NMRAL1Q9HBL8 299 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 MAN1C1Q9NR34 630 aa16.7■□□□□ 0.26
CLCNKA-203ENST00000439316 FAM72CH0Y354 149 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 PEX1O43933 1283 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 C2P06681 752 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 F7P08709 466 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 KCNE1P15382 129 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 ERCC2P18074 760 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 AIF1P55008 147 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 NKX3-2P78367 333 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 SCAPQ12770 1279 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 NME3Q13232 169 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MPP3Q13368 585 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 PCBP1Q15365 356 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 SV2CQ496J9 727 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 FAM72AQ5TYM5 149 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 FAM72DQ6L9T8 149 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 FAM72BQ86X60 149 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 RNF169Q8NCN4 708 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 ZNF296Q8WUU4 475 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 CNDP1Q96KN2 507 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 OR52B2Q96RD2 323 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MLPHQ9BV36 600 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 GATA5Q9BWX5 397 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 GBA3Q9H227 469 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 TCF7L2Q9NQB0 619 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MID2Q9UJV3 735 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 BEST1O76090 585 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 LTFP02788 710 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 CD68P34810 354 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 SERPINB6P35237 376 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 ADRA1BP35368 520 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 SOX4Q06945 474 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MED21Q13503 144 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 GRM2Q14416 872 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 LRRC36Q1X8D7 754 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 HSP90AA5PQ58FG0 334 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 XKR4Q5GH76 650 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MAP3K21Q5TCX8 1036 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 KCNMB4Q86W47 210 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 ST13P4Q8IZP2 240 aaPredicted RBP16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 EFCAB3Q8N7B9 438 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MFSD3Q96ES6 412 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 TRIM4Q9C037 500 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 OXSMQ9NWU1 459 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 SSX2IPQ9Y2D8 614 aa16.69■□□□□ 0.26
CLCNKA-203ENST00000439316 MATN2O00339 956 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 CLDN5O00501 218 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 NCAM2O15394 837 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 ZBTB24O43167 697 aaPredicted RBP16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 XPOTO43592 962 aaKnown RBP16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 HUS1O60921 280 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 SNUPNO95149 360 aaKnown RBP16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 APOA4P06727 396 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 ASGR1P07306 291 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 DARSP14868 501 aaKnown RBP16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 PIK3R1P27986 724 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 ABCG1P45844 678 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 NDUFV1P49821 464 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 HK2P52789 917 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 POLE2P56282 527 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 TRIP10Q15642 601 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 KCNA10Q16322 511 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 LIN52Q52LA3 116 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 HFE2Q6ZVN8 426 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 PAQR9Q6ZVX9 377 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 SIX6OS1Q8N1H7 587 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 TOP6BLQ8N6T0 577 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 NPWQ8N729 165 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 DNAAF3Q8N9W5 541 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 RDH11Q8TC12 318 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 STON2Q8WXE9 905 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 VPS39Q96JC1 886 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 LENG8Q96PV6 779 aaPredicted RBP16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 TSPAN18Q96SJ8 248 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 BRD8Q9H0E9 1235 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 GOLGA2P5Q9HBQ8 144 aa16.68■□□□□ 0.26
CLCNKA-203ENST00000439316 LRRC4Q9HBW1 653 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms