RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SERPINB8P50452 374 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NEK3P51956 506 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 YWHAEP62258 255 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CRADDP78560 199 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MRPS15P82914 257 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ARHGAP8P85298 464 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CDK16Q00536 496 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GHRHRQ02643 423 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 BST1Q10588 318 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ORC2Q13416 577 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ALCAMQ13740 583 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GAS6Q14393 721 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NEDD8Q15843 81 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF568Q3ZCX4 644 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 KBTBD2Q8IY47 623 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MAB21L3Q8N8X9 362 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 NETO2Q8NC67 525 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 DDHD1Q8NEL9 900 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 OR6B3Q8NGW1 331 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ATP6V1E2Q96A05 226 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CATSPER2Q96P56 530 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CDC6Q99741 560 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CADM1Q9BY67 442 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TRIM8Q9BZR9 551 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TASP1Q9H6P5 420 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ARHGEF3Q9NR81 526 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ETNK2Q9NVF9 386 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GJD2Q9UKL4 321 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SLC12A4Q9UP95 1085 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 STARD13Q9Y3M8 1113 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GOLGA8TH3BQL2 631 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 CYB561D2O14569 222 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MGEA5O60502 916 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 P4HA1P13674 534 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 VCAM1P19320 739 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SDC4P31431 198 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PRKCIP41743 596 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GTF2A2P52657 109 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 JAM2P57087 298 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PDK3Q15120 406 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 PDK4Q16654 411 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TMTC4Q5T4D3 741 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM179Q6ZVK1 233 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 FGD2Q7Z6J4 655 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GALNT15Q8N3T1 639 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 EIF1ADQ8N9N8 165 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 RBM15BQ8NDT2 890 aaKnown RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ART4Q93070 314 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 MARK4Q96L34 752 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ECSITQ9BQ95 431 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM79Q9BSE2 394 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 POLR3FQ9H1D9 316 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 DMAP1Q9NPF5 467 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ASNSD1Q9NWL6 643 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF212Q9UDV6 495 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 TJP2Q9UDY2 1190 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 SLC39A10Q9ULF5 831 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 GRID1Q9ULK0 1009 aa5.6□□□□□ -1.51
LIMA1-203ENST00000547825 DYTNA2CJ06 578 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PABPN1LA6NDY0 278 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 KPNA7A9QM74 516 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CES2O00748 559 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PEX11AO75192 247 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 FAM155BO75949 473 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PROSCO94903 275 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ALBP02768 609 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ITGAVP06756 1048 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 LINGO3P0C6S8 592 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CETPP11597 493 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 GZMAP12544 262 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 AVPR1AP37288 418 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 RTP1P59025 263 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 NME3Q13232 169 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CRHR2Q13324 411 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 LIN52Q52LA3 116 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TREML2Q5T2D2 321 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 SCARA3Q6AZY7 606 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ITPRIPL1Q6GPH6 555 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 RWDD4Q6NW29 188 aaKnown RBP5.59□□□□□ -1.51
LIMA1-203ENST00000547825 KLC3Q6P597 504 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 VSTM1Q6UX27 236 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 SLFN11Q7Z7L1 901 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TRABD2AQ86V40 505 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 SATL1Q86VE3 508 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 DDIASQ8IXT1 998 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 OR6Y1Q8NGX8 325 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CDC26Q8NHZ8 85 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 BORCS6Q96GS4 357 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 CNDP1Q96KN2 507 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TRAPPC9Q96Q05 1148 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PCDHB18PQ96TA0 734 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 TAS2R1Q9NYW7 299 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 GRHL1Q9NZI5 618 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 PCYOX1Q9UHG3 505 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 BAG5Q9UL15 447 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 ASTN1O14525 1302 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 KIAA1671Q9BY89 1806 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 COL4A6Q14031 1691 aa5.59□□□□□ -1.51
LIMA1-203ENST00000547825 AP3B1O00203 1094 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms