RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CHIC1Q5VXU3 224 aa14.81□□□□□ -0.04
LIMA1-203ENST00000547825 AEBP2Q6ZN18 517 aaPredicted RBP14.75□□□□□ -0.05
LIMA1-203ENST00000547825 PHF23Q9BUL5 403 aaPredicted RBP13.27□□□□□ -0.29
LIMA1-203ENST00000547825 PLPPR3Q6T4P5 718 aa12.24□□□□□ -0.45
LIMA1-203ENST00000547825 NISCHQ9Y2I1 1504 aa12.19□□□□□ -0.46
LIMA1-203ENST00000547825 SENP3Q9H4L4 574 aaPredicted RBP12.14□□□□□ -0.47
LIMA1-203ENST00000547825 ADRA2BP18089 450 aa11.75□□□□□ -0.53
LIMA1-203ENST00000547825 EHMT2Q96KQ7 1210 aa11.58□□□□□ -0.56
LIMA1-203ENST00000547825 PPP6R1Q9UPN7 881 aa11.57□□□□□ -0.56
LIMA1-203ENST00000547825 KCNA4P22459 653 aa11.54□□□□□ -0.56
LIMA1-203ENST00000547825 FOXD1Q16676 465 aa11.38□□□□□ -0.59
LIMA1-203ENST00000547825 CCDC180Q9P1Z9 1646 aa11.11□□□□□ -0.63
LIMA1-203ENST00000547825 CSRNP3Q8WYN3 585 aa11.08□□□□□ -0.64
LIMA1-203ENST00000547825 SLC4A1APQ9BWU0 796 aaKnown RBP10.97□□□□□ -0.65
LIMA1-203ENST00000547825 PPP4R3CPQ6ZMV5 832 aa10.95□□□□□ -0.66
LIMA1-203ENST00000547825 PIAS4Q8N2W9 510 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-203ENST00000547825 NPM3O75607 178 aaKnown RBP10.74□□□□□ -0.69
LIMA1-203ENST00000547825 ZBTB22O15209 634 aa10.71□□□□□ -0.69
LIMA1-203ENST00000547825 NCBP3Q53F19 620 aaKnown RBP10.65□□□□□ -0.7
LIMA1-203ENST00000547825 CNKSR2Q8WXI2 1034 aa10.41□□□□□ -0.74
LIMA1-203ENST00000547825 MYO15BQ96JP2 1530 aa10.37□□□□□ -0.75
LIMA1-203ENST00000547825 MAPK8IP2Q13387 824 aaPredicted RBP10.35□□□□□ -0.75
LIMA1-203ENST00000547825 UNC13AQ9UPW8 1703 aa10.34□□□□□ -0.75
LIMA1-203ENST00000547825 ABCC9O60706 1549 aa10.32□□□□□ -0.76
LIMA1-203ENST00000547825 DCAF1Q9Y4B6 1507 aa10.3□□□□□ -0.76
LIMA1-203ENST00000547825 RTN4Q9NQC3 1192 aaKnown RBP10.27□□□□□ -0.77
LIMA1-203ENST00000547825 FOXD4L1Q9NU39 408 aa10.27□□□□□ -0.77
LIMA1-203ENST00000547825 NACADO15069 1562 aa10.25□□□□□ -0.77
LIMA1-203ENST00000547825 ZCCHC6Q5VYS8 1495 aaKnown RBP10.23□□□□□ -0.77
LIMA1-203ENST00000547825 SCAF1Q9H7N4 1312 aaKnown RBP10.22□□□□□ -0.77
LIMA1-203ENST00000547825 RB1CC1Q8TDY2 1594 aa10.19□□□□□ -0.78
LIMA1-203ENST00000547825 SLC24A1O60721 1099 aa10.16□□□□□ -0.78
LIMA1-203ENST00000547825 BICRAQ9NZM4 1560 aa10.1□□□□□ -0.79
LIMA1-203ENST00000547825 DNAJC5BQ9UF47 199 aa10.05□□□□□ -0.8
LIMA1-203ENST00000547825 RNF216Q9NWF9 866 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-203ENST00000547825 SLC4A2P04920 1241 aa10.04□□□□□ -0.8
LIMA1-203ENST00000547825 MSH5O43196 834 aa10.01□□□□□ -0.81
LIMA1-203ENST00000547825 AMER1Q5JTC6 1135 aaPredicted RBP9.99□□□□□ -0.81
LIMA1-203ENST00000547825 SHROOM4Q9ULL8 1493 aa9.98□□□□□ -0.81
LIMA1-203ENST00000547825 FKBP8Q14318 412 aa9.95□□□□□ -0.82
LIMA1-203ENST00000547825 HOXD11P31277 338 aaPredicted RBP9.86□□□□□ -0.83
LIMA1-203ENST00000547825 DMRT2Q9Y5R5 561 aa9.83□□□□□ -0.84
LIMA1-203ENST00000547825 SCRIBQ14160 1630 aa9.78□□□□□ -0.84
LIMA1-203ENST00000547825 MYCNP04198 464 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-203ENST00000547825 ATF5Q9Y2D1 282 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-203ENST00000547825 ATXN8OSP0DMR3 200 aa9.71□□□□□ -0.86
LIMA1-203ENST00000547825 EIF4G1Q04637 1599 aaKnown RBP9.66□□□□□ -0.86
LIMA1-203ENST00000547825 PEG3Q9GZU2 1588 aa9.62□□□□□ -0.87
LIMA1-203ENST00000547825 CC2D2AQ9P2K1 1620 aa9.61□□□□□ -0.87
LIMA1-203ENST00000547825 SMARCA4P51532 1647 aa9.53□□□□□ -0.88
LIMA1-203ENST00000547825 DCAF8L1A6NGE4 600 aa9.51□□□□□ -0.89
LIMA1-203ENST00000547825 HMGXB3Q12766 1538 aa9.46□□□□□ -0.89
LIMA1-203ENST00000547825 PABPN1Q86U42 306 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIMA1-203ENST00000547825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.44□□□□□ -0.98e-10■■■□□ 17.1
LIMA1-203ENST00000547825 U3KPZ7 1027 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-203ENST00000547825 SMARCA2P51531 1590 aa9.41□□□□□ -0.9
LIMA1-203ENST00000547825 BAZ1AQ9NRL2 1556 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-203ENST00000547825 NCAPD3P42695 1498 aa9.4□□□□□ -0.9
LIMA1-203ENST00000547825 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.9
LIMA1-203ENST00000547825 PRDM2Q13029 1718 aa9.36□□□□□ -0.91
LIMA1-203ENST00000547825 MROH2BQ7Z745 1585 aa9.36□□□□□ -0.91
LIMA1-203ENST00000547825 ATAD2BQ9ULI0 1458 aa9.35□□□□□ -0.91
LIMA1-203ENST00000547825 SAMD1Q6SPF0 538 aaPredicted RBP9.32□□□□□ -0.92
LIMA1-203ENST00000547825 WIZO95785 1651 aa9.31□□□□□ -0.92
LIMA1-203ENST00000547825 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
LIMA1-203ENST00000547825 PLCB2Q00722 1185 aa9.31□□□□□ -0.92
LIMA1-203ENST00000547825 ZNF219Q9P2Y4 722 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-203ENST00000547825 MKRN4PQ13434 485 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-203ENST00000547825 SPDYE4A6NLX3 237 aa9.26□□□□□ -0.93
LIMA1-203ENST00000547825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-203ENST00000547825 HNRNPUL2Q1KMD3 747 aaKnown RBP9.25□□□□□ -0.93
LIMA1-203ENST00000547825 PRKCSHP14314 528 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-203ENST00000547825 IFNLR1Q8IU57 520 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-203ENST00000547825 THOC2Q8NI27 1593 aaKnown RBP9.22□□□□□ -0.93
LIMA1-203ENST00000547825 TOP2AP11388 1531 aaKnown RBP9.22□□□□□ -0.93
LIMA1-203ENST00000547825 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-203ENST00000547825 LAMC3Q9Y6N6 1575 aa9.21□□□□□ -0.94
LIMA1-203ENST00000547825 VASPP50552 380 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-203ENST00000547825 KIF21AQ7Z4S6 1674 aa9.2□□□□□ -0.94
LIMA1-203ENST00000547825 RSF1Q96T23 1441 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-203ENST00000547825 FBXO3Q9UK99 471 aa9.18□□□□□ -0.94
LIMA1-203ENST00000547825 PKD2Q13563 968 aa9.15□□□□□ -0.94
LIMA1-203ENST00000547825 BAZ1BQ9UIG0 1483 aaKnown RBP9.15□□□□□ -0.94
LIMA1-203ENST00000547825 PROM2Q8N271 834 aa9.14□□□□□ -0.95
LIMA1-203ENST00000547825 SUPT5HO00267 1087 aaKnown RBP9.09□□□□□ -0.95
LIMA1-203ENST00000547825 SPINK5Q9NQ38 1064 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-203ENST00000547825 WDR62O43379 1518 aa9.07□□□□□ -0.96
LIMA1-203ENST00000547825 CFTRP13569 1480 aa9.06□□□□□ -0.96
LIMA1-203ENST00000547825 TRHP20396 242 aaPredicted RBP9.05□□□□□ -0.96
LIMA1-203ENST00000547825 NESP48681 1621 aa9.05□□□□□ -0.96
LIMA1-203ENST00000547825 FBLN2P98095 1184 aa9.05□□□□□ -0.96
LIMA1-203ENST00000547825 KDM2AQ9Y2K7 1162 aa9.04□□□□□ -0.96
LIMA1-203ENST00000547825 POLA2Q14181 598 aa9.04□□□□□ -0.96
LIMA1-203ENST00000547825 CUX2O14529 1486 aa9.04□□□□□ -0.96
LIMA1-203ENST00000547825 TAOK2Q9UL54 1235 aa9.03□□□□□ -0.96
LIMA1-203ENST00000547825 NPM1P06748 294 aaKnown RBP eCLIP9.01□□□□□ -0.97
LIMA1-203ENST00000547825 WDR97A6NE52 1622 aa9.01□□□□□ -0.97
LIMA1-203ENST00000547825 BCANQ96GW7 911 aa9.01□□□□□ -0.97
LIMA1-203ENST00000547825 CCDC88BA6NC98 1476 aa8.99□□□□□ -0.97
LIMA1-203ENST00000547825 CADPSQ9ULU8 1353 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms