RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C MOD5P07884 428 aa2.57□□□□□ -2
UFD4YKL010C MCM3P24279 971 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C GCD11P32481 527 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C GEF1P37020 779 aa2.57□□□□□ -2
UFD4YKL010C NPA3P47122 385 aa2.57□□□□□ -2
UFD4YKL010C PAP2P53632 584 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C MEC3Q02574 474 aa2.57□□□□□ -2
UFD4YKL010C BRE1Q07457 700 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C DDP1Q99321 188 aaKnown RBP2.57□□□□□ -2
UFD4YKL010C HSP104P31539 908 aaKnown RBP2.56□□□□□ -2
UFD4YKL010C YKR075CP36155 307 aa2.56□□□□□ -2
UFD4YKL010C YGL242CP53066 181 aa2.56□□□□□ -2
UFD4YKL010C SPO1P53541 631 aa2.56□□□□□ -2
UFD4YKL010C SSP2Q08646 371 aa2.56□□□□□ -2
UFD4YKL010C CDC4P07834 779 aa2.56□□□□□ -2
UFD4YKL010C RAD4P14736 754 aa2.56□□□□□ -2
UFD4YKL010C SIT4P20604 311 aa2.56□□□□□ -2
UFD4YKL010C KAR5Q04746 504 aa2.56□□□□□ -2
UFD4YKL010C LPD1P09624 499 aaKnown RBP2.56□□□□□ -2
UFD4YKL010C SPT16P32558 1035 aaKnown RBP2.56□□□□□ -2
UFD4YKL010C GLO3P38682 493 aaKnown RBP2.56□□□□□ -2
UFD4YKL010C CCC2P38995 1004 aa2.56□□□□□ -2
UFD4YKL010C AGE1Q04412 482 aa2.56□□□□□ -2
UFD4YKL010C LAM4P38800 1345 aa2.56□□□□□ -2
UFD4YKL010C POM152P39685 1337 aa2.56□□□□□ -2
UFD4YKL010C MATALPHA2P0CY08 210 aa2.56□□□□□ -2
UFD4YKL010C HMLALPHA2P0CY09 210 aa2.56□□□□□ -2
UFD4YKL010C RPN12P32496 274 aa2.56□□□□□ -2
UFD4YKL010C HXT13P39924 564 aa2.56□□□□□ -2
UFD4YKL010C MLC1P53141 149 aa2.56□□□□□ -2
UFD4YKL010C PSK2Q08217 1101 aa2.56□□□□□ -2
UFD4YKL010C RIM20Q12033 661 aa2.56□□□□□ -2
UFD4YKL010C GRX1P25373 110 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C BRE2P43132 505 aa2.55□□□□□ -2
UFD4YKL010C MRPS35P53292 345 aa2.55□□□□□ -2
UFD4YKL010C ALO1P54783 526 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C HED1Q03937 162 aa2.55□□□□□ -2
UFD4YKL010C CBP3P21560 335 aa2.55□□□□□ -2
UFD4YKL010C STE11P23561 717 aa2.55□□□□□ -2
UFD4YKL010C YHL017WP38745 532 aa2.55□□□□□ -2
UFD4YKL010C RPN1P38764 993 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C PAT1P25644 796 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C KTR1P27810 393 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C ARL1P38116 183 aaKnown RBP2.55□□□□□ -2
UFD4YKL010C CLA4P48562 842 aa2.55□□□□□ -2
UFD4YKL010C HXT17P53631 564 aa2.55□□□□□ -2
UFD4YKL010C MAM3Q12296 706 aa2.55□□□□□ -2
UFD4YKL010C IES2P40154 320 aa2.54□□□□□ -2
UFD4YKL010C AIR1P40507 360 aaKnown RBP2.54□□□□□ -2
UFD4YKL010C RRN7P40992 514 aa2.54□□□□□ -2
UFD4YKL010C NUP42P49686 430 aaKnown RBP2.54□□□□□ -2
UFD4YKL010C ERF2Q06551 359 aa2.54□□□□□ -2
UFD4YKL010C ASF1P32447 279 aa2.54□□□□□ -2
UFD4YKL010C PBY1P38254 753 aa2.54□□□□□ -2
UFD4YKL010C BDP1P46678 594 aa2.54□□□□□ -2
UFD4YKL010C CTR9P89105 1077 aa2.54□□□□□ -2
UFD4YKL010C YPL062WQ02781 134 aa2.54□□□□□ -2
UFD4YKL010C LCD1Q04377 747 aa2.54□□□□□ -2
UFD4YKL010C KEX2P13134 814 aa2.54□□□□□ -2
UFD4YKL010C RVS167P39743 482 aaKnown RBP2.54□□□□□ -2
UFD4YKL010C YPT11P48559 417 aa2.54□□□□□ -2
UFD4YKL010C FOX2Q02207 900 aaKnown RBP2.54□□□□□ -2
UFD4YKL010C RMT2Q03305 412 aa2.54□□□□□ -2
UFD4YKL010C SKI2P35207 1287 aaKnown RBP RIP-Chip data2.53□□□□□ -2not detected
UFD4YKL010C NMD2P38798 1089 aaKnown RBP2.53□□□□□ -2
UFD4YKL010C PAC1P39946 494 aaKnown RBP2.53□□□□□ -2
UFD4YKL010C STU2P46675 888 aa2.53□□□□□ -2
UFD4YKL010C YGR122WP53272 402 aa2.53□□□□□ -2
UFD4YKL010C PEX19Q07418 342 aa2.53□□□□□ -2
UFD4YKL010C CYB2P00175 591 aa2.53□□□□□ -2
UFD4YKL010C CUE3P53137 624 aaKnown RBP2.53□□□□□ -2
UFD4YKL010C UBP16Q02863 499 aa2.53□□□□□ -2
UFD4YKL010C PIF1P07271 859 aa2.52□□□□□ -2.01
UFD4YKL010C PGI1P12709 554 aaKnown RBP2.52□□□□□ -2.01
UFD4YKL010C EBP2P36049 427 aaKnown RBP2.52□□□□□ -2.01
UFD4YKL010C TTI1P36097 1038 aa2.52□□□□□ -2.01
UFD4YKL010C HAL5P38970 855 aaKnown RBP2.52□□□□□ -2.01
UFD4YKL010C YNL115CP53925 644 aa2.52□□□□□ -2.01
UFD4YKL010C ETT1Q08421 412 aaKnown RBP2.52□□□□□ -2.01
UFD4YKL010C ALE1Q08548 619 aa2.52□□□□□ -2.01
UFD4YKL010C ELG1Q12050 791 aa2.52□□□□□ -2.01
UFD4YKL010C FRS2P15625 503 aaKnown RBP2.52□□□□□ -2.01
UFD4YKL010C VPS20Q04272 221 aa2.52□□□□□ -2.01
UFD4YKL010C RLF2Q12495 606 aa2.52□□□□□ -2.01
UFD4YKL010C PRP45P28004 379 aaPredicted RBP2.52□□□□□ -2.01
UFD4YKL010C FBP26P32604 452 aa2.52□□□□□ -2.01
UFD4YKL010C ATG32P40458 529 aa2.52□□□□□ -2.01
UFD4YKL010C TUB4P53378 473 aa2.52□□□□□ -2.01
UFD4YKL010C NYV1Q12255 253 aa2.52□□□□□ -2.01
UFD4YKL010C TUS1Q06412 1307 aa2.52□□□□□ -2.01
UFD4YKL010C PET111P08468 800 aa2.52□□□□□ -2.01
UFD4YKL010C NPR3P38742 1146 aa2.52□□□□□ -2.01
UFD4YKL010C RSM25P40496 264 aa2.52□□□□□ -2.01
UFD4YKL010C CWH41P53008 833 aa2.52□□□□□ -2.01
UFD4YKL010C FRK1Q03002 865 aaPredicted RBP2.52□□□□□ -2.01
UFD4YKL010C ENV9Q08651 330 aa2.52□□□□□ -2.01
UFD4YKL010C TAH18Q12181 623 aa2.52□□□□□ -2.01
UFD4YKL010C RFC1P38630 861 aaKnown RBP2.51□□□□□ -2.01
UFD4YKL010C ZDS2P54786 942 aa2.51□□□□□ -2.01
UFD4YKL010C MOT1P32333 1867 aa2.51□□□□□ -2.01
Retrieved 100 of 5,963 RNA–protein pairs in 17 ms