RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	GUP1	P53154	560 aa		4.94	□□□□□ -1.62
SMB1	YER029C	NCE103	P53615	221 aa		4.94	□□□□□ -1.62
SMB1	YER029C	FOX2	Q02207	900 aa	Known RBP	4.94	□□□□□ -1.62
SMB1	YER029C	MAE1	P36013	669 aa	Known RBP	4.93	□□□□□ -1.62
SMB1	YER029C	SIS2	P36024	562 aa		4.93	□□□□□ -1.62
SMB1	YER029C	GIS1	Q03833	894 aa		4.93	□□□□□ -1.62
SMB1	YER029C	ESC8	Q08119	714 aa		4.93	□□□□□ -1.62
SMB1	YER029C	SUV3	P32580	737 aa		4.91	□□□□□ -1.62
SMB1	YER029C	POL5	P39985	1022 aa	Known RBP	4.91	□□□□□ -1.62
SMB1	YER029C	PRP43	P53131	767 aa	Known RBP	4.91	□□□□□ -1.62
SMB1	YER029C	GCD1	P09032	578 aa	Predicted RBP	4.9	□□□□□ -1.63
SMB1	YER029C	GAS1	P22146	559 aa	Known RBP	4.9	□□□□□ -1.63
SMB1	YER029C	BIO5	P53744	561 aa	Known RBP	4.9	□□□□□ -1.63
SMB1	YER029C	SOG2	Q08817	791 aa		4.9	□□□□□ -1.63
SMB1	YER029C	RLF2	Q12495	606 aa		4.9	□□□□□ -1.63
SMB1	YER029C	DFG16	Q99234	619 aa		4.9	□□□□□ -1.63
SMB1	YER029C	SPO71	Q03868	1245 aa		4.89	□□□□□ -1.63
SMB1	YER029C	GIC2	Q06648	383 aa		4.89	□□□□□ -1.63
SMB1	YER029C	ELG1	Q12050	791 aa		4.89	□□□□□ -1.63
SMB1	YER029C	CPS1	P27614	576 aa		4.88	□□□□□ -1.63
SMB1	YER029C	TFA2	P36145	328 aa		4.88	□□□□□ -1.63
SMB1	YER029C	TGL4	P36165	910 aa		4.88	□□□□□ -1.63
SMB1	YER029C	MSN1	P22148	382 aa		4.87	□□□□□ -1.63
SMB1	YER029C	YBR197C	P38306	217 aa		4.87	□□□□□ -1.63
SMB1	YER029C	GIP4	P39732	760 aa		4.87	□□□□□ -1.63
SMB1	YER029C	ALD3	P54114	506 aa		4.87	□□□□□ -1.63
SMB1	YER029C	FUS1	P11710	512 aa		4.86	□□□□□ -1.63
SMB1	YER029C	EMG1	Q06287	252 aa	Known RBP	4.86	□□□□□ -1.63
SMB1	YER029C	ERS1	P17261	260 aa		4.85	□□□□□ -1.63
SMB1	YER029C	PUP1	P25043	261 aa		4.85	□□□□□ -1.63
SMB1	YER029C	YBR287W	P38355	427 aa		4.85	□□□□□ -1.63
SMB1	YER029C	KIP3	P53086	805 aa	Known RBP	4.85	□□□□□ -1.63
SMB1	YER029C	NSI1	Q12457	570 aa		4.85	□□□□□ -1.63
SMB1	YER029C	YHL008C	P38750	627 aa		4.84	□□□□□ -1.63
SMB1	YER029C	ISC10	P32645	267 aa		4.83	□□□□□ -1.64
SMB1	YER029C	NEO1	P40527	1151 aa		4.83	□□□□□ -1.64
SMB1	YER029C	MMM1	P41800	426 aa		4.83	□□□□□ -1.64
SMB1	YER029C	ECM23	Q02710	187 aa		4.83	□□□□□ -1.64
SMB1	YER029C	NOB1	Q08444	459 aa	Known RBP	4.83	□□□□□ -1.64
SMB1	YER029C	BOI1	P38041	980 aa	Known RBP	4.82	□□□□□ -1.64
SMB1	YER029C	AIM46	P38885	310 aa		4.82	□□□□□ -1.64
SMB1	YER029C	FIR1	P40020	876 aa		4.82	□□□□□ -1.64
SMB1	YER029C	CIT3	P43635	486 aa		4.82	□□□□□ -1.64
SMB1	YER029C	YML083C	Q04526	418 aa		4.82	□□□□□ -1.64
SMB1	YER029C	CDA2	Q06703	312 aa		4.82	□□□□□ -1.64
SMB1	YER029C	SSA4	P22202	642 aa	Known RBP	4.81	□□□□□ -1.64
SMB1	YER029C	ALD4	P46367	519 aa	Known RBP	4.81	□□□□□ -1.64
SMB1	YER029C	FAR11	P53917	953 aa		4.81	□□□□□ -1.64
SMB1	YER029C	HSP78	P33416	811 aa		4.8	□□□□□ -1.64
SMB1	YER029C	WHI3	P34761	661 aa	Known RBP	4.8	□□□□□ -1.64
SMB1	YER029C	UBX7	P38349	436 aa		4.8	□□□□□ -1.64
SMB1	YER029C	SUB2	Q07478	446 aa	Known RBP	4.8	□□□□□ -1.64
SMB1	YER029C	TSA1	P34760	196 aa	Known RBP	4.79	□□□□□ -1.64
SMB1	YER029C	YJR124C	P47159	448 aa		4.79	□□□□□ -1.64
SMB1	YER029C	YNR065C	P53751	1116 aa		4.79	□□□□□ -1.64
SMB1	YER029C	HAS1	Q03532	505 aa	Known RBP	4.79	□□□□□ -1.64
SMB1	YER029C	HXT8	P40886	569 aa		4.78	□□□□□ -1.64
SMB1	YER029C	TAF7	Q05021	590 aa		4.78	□□□□□ -1.64
SMB1	YER029C	YOR059C	Q08448	450 aa	Known RBP	4.78	□□□□□ -1.64
SMB1	YER029C	YOR223W	Q12015	292 aa		4.78	□□□□□ -1.64
SMB1	YER029C	RCM1	P53972	490 aa		4.77	□□□□□ -1.65
SMB1	YER029C	HVG1	P0CE11	249 aa		4.76	□□□□□ -1.65
SMB1	YER029C	YMR074C	Q04773	145 aa		4.76	□□□□□ -1.65
SMB1	YER029C	THI80	P35202	319 aa		4.75	□□□□□ -1.65
SMB1	YER029C	GPT2	P36148	743 aa		4.75	□□□□□ -1.65
SMB1	YER029C	FET4	P40988	552 aa		4.75	□□□□□ -1.65
SMB1	YER029C	RGD2	P43556	714 aa		4.75	□□□□□ -1.65
SMB1	YER029C	PUN1	Q06991	263 aa		4.74	□□□□□ -1.65
SMB1	YER029C	GLO4	Q12320	285 aa		4.74	□□□□□ -1.65
SMB1	YER029C	NTA1	P40354	457 aa		4.73	□□□□□ -1.65
SMB1	YER029C	OYE3	P41816	400 aa	Predicted RBP	4.73	□□□□□ -1.65
SMB1	YER029C	CWC15	Q03772	175 aa	Known RBP	4.73	□□□□□ -1.65
SMB1	YER029C	PUF6	Q04373	656 aa	Known RBP	4.73	□□□□□ -1.65
SMB1	YER029C	HDA2	Q06629	674 aa		4.73	□□□□□ -1.65
SMB1	YER029C	PRP6	P19735	899 aa	Predicted RBP	4.72	□□□□□ -1.65
SMB1	YER029C	FLR1	P38124	548 aa		4.72	□□□□□ -1.65
SMB1	YER029C	DOT1	Q04089	582 aa	Known RBP	4.72	□□□□□ -1.65
SMB1	YER029C	ADP1	P25371	1049 aa		4.71	□□□□□ -1.66
SMB1	YER029C	MSH6	Q03834	1242 aa		4.71	□□□□□ -1.66
SMB1	YER029C	YLL054C	Q12244	843 aa		4.71	□□□□□ -1.66
SMB1	YER029C	SRS2	P12954	1174 aa		4.7	□□□□□ -1.66
SMB1	YER029C	SUT1	P53032	299 aa	Known RBP	4.7	□□□□□ -1.66
SMB1	YER029C	ORC3	P54790	616 aa		4.7	□□□□□ -1.66
SMB1	YER029C	KTR2	P33550	425 aa		4.69	□□□□□ -1.66
SMB1	YER029C	RAD55	P38953	406 aa		4.69	□□□□□ -1.66
SMB1	YER029C	TIF6	Q12522	245 aa	Known RBP	4.69	□□□□□ -1.66
SMB1	YER029C	SSA1	P10591	642 aa	Known RBP	4.68	□□□□□ -1.66
SMB1	YER029C	PYC2	P32327	1180 aa	Known RBP	4.68	□□□□□ -1.66
SMB1	YER029C	RPS4A	P0CX35	261 aa	Known RBP	4.67	□□□□□ -1.66
SMB1	YER029C	RPS4B	P0CX36	261 aa	Known RBP	4.67	□□□□□ -1.66
SMB1	YER029C	IRS4	P36115	615 aa	Known RBP	4.67	□□□□□ -1.66
SMB1	YER029C	PSY2	P40164	858 aa		4.67	□□□□□ -1.66
SMB1	YER029C	GCV1	P48015	400 aa		4.67	□□□□□ -1.66
SMB1	YER029C	SSY1	Q03770	852 aa		4.67	□□□□□ -1.66
SMB1	YER029C	AIM3	P38266	947 aa	Known RBP	4.66	□□□□□ -1.66
SMB1	YER029C	TRE1	Q08919	783 aa		4.66	□□□□□ -1.66
SMB1	YER029C	APC11	Q12157	165 aa		4.66	□□□□□ -1.66
SMB1	YER029C	BOL3	P39724	118 aa		4.65	□□□□□ -1.67
SMB1	YER029C	PNP1	Q05788	311 aa		4.65	□□□□□ -1.67
SMB1	YER029C	SMC1	P32908	1225 aa		4.64	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 41.8 ms