RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CFAP99D6REC4 459 aa9.74□□□□□ -0.85
VPS53-212ENST00000572259 BRICD5Q6PL45 260 aa9.74□□□□□ -0.85
VPS53-212ENST00000572259 USB1Q9BQ65 265 aaKnown RBP9.74□□□□□ -0.85
VPS53-212ENST00000572259 PRM3Q9NNZ6 103 aa9.74□□□□□ -0.85
VPS53-212ENST00000572259 EIF4G3O43432 1585 aaKnown RBP9.74□□□□□ -0.85
VPS53-212ENST00000572259 USP17L8P0C7I0 530 aa9.73□□□□□ -0.85
VPS53-212ENST00000572259 CTDSPL2Q05D32 466 aa9.73□□□□□ -0.85
VPS53-212ENST00000572259 RNF19BQ6ZMZ0 732 aa9.73□□□□□ -0.85
VPS53-212ENST00000572259 TOP2BQ02880 1626 aa9.73□□□□□ -0.85
VPS53-212ENST00000572259 BIVM-ERCC5R4GMW8 1640 aa9.72□□□□□ -0.85
VPS53-212ENST00000572259 CLUAP1Q96AJ1 413 aa9.71□□□□□ -0.86
VPS53-212ENST00000572259 CHMP7Q8WUX9 453 aaPredicted RBP9.7□□□□□ -0.86
VPS53-212ENST00000572259 SPSB2Q99619 263 aa9.7□□□□□ -0.86
VPS53-212ENST00000572259 GRIN2BQ13224 1484 aa9.7□□□□□ -0.86
VPS53-212ENST00000572259 GAPVD1Q14C86 1478 aa9.7□□□□□ -0.86
VPS53-212ENST00000572259 ABCA10Q8WWZ4 1543 aa9.7□□□□□ -0.86
VPS53-212ENST00000572259 DESI1Q6ICB0 168 aa9.69□□□□□ -0.86
VPS53-212ENST00000572259 MTMR14Q8NCE2 650 aa9.69□□□□□ -0.86
VPS53-212ENST00000572259 THAP11Q96EK4 314 aa9.69□□□□□ -0.86
VPS53-212ENST00000572259 MTRQ99707 1265 aa9.69□□□□□ -0.86
VPS53-212ENST00000572259 IL21Q9HBE4 155 aa9.69□□□□□ -0.86
VPS53-212ENST00000572259 SYNJ1O43426 1573 aa9.68□□□□□ -0.86
VPS53-212ENST00000572259 ZPR1O75312 459 aa9.68□□□□□ -0.86
VPS53-212ENST00000572259 RNF166Q96A37 237 aaPredicted RBP9.68□□□□□ -0.86
VPS53-212ENST00000572259 HCSTQ9UBK5 93 aa9.68□□□□□ -0.86
VPS53-212ENST00000572259 MAGI1Q96QZ7 1491 aaPredicted RBP9.67□□□□□ -0.86
VPS53-212ENST00000572259 A6NJR5 290 aa9.67□□□□□ -0.86
VPS53-212ENST00000572259 SOCS7O14512 581 aa9.67□□□□□ -0.86
VPS53-212ENST00000572259 LRRN4Q8WUT4 740 aa9.67□□□□□ -0.86
VPS53-212ENST00000572259 ZBTB7CA1YPR0 619 aa9.66□□□□□ -0.86
VPS53-212ENST00000572259 POM121Q96HA1 1249 aa9.66□□□□□ -0.86
VPS53-212ENST00000572259 COG6Q9Y2V7 657 aa9.66□□□□□ -0.86
VPS53-212ENST00000572259 SNAPC4Q5SXM2 1469 aa9.66□□□□□ -0.86
VPS53-212ENST00000572259 JUNDP17535 347 aa9.65□□□□□ -0.86
VPS53-212ENST00000572259 TJAP1Q5JTD0 557 aa9.65□□□□□ -0.86
VPS53-212ENST00000572259 WWC1Q8IX03 1113 aa9.65□□□□□ -0.86
VPS53-212ENST00000572259 GDPD2Q9HCC8 539 aa9.65□□□□□ -0.86
VPS53-212ENST00000572259 CHD1O14646 1710 aa9.65□□□□□ -0.87
VPS53-212ENST00000572259 PBRM1Q86U86 1689 aa9.64□□□□□ -0.87
VPS53-212ENST00000572259 PER1O15534 1290 aaPredicted RBP9.64□□□□□ -0.87
VPS53-212ENST00000572259 ADH1BP00325 375 aa9.64□□□□□ -0.87
VPS53-212ENST00000572259 MSS51Q4VC12 460 aa9.64□□□□□ -0.87
VPS53-212ENST00000572259 LYPD8Q6UX82 237 aa9.64□□□□□ -0.87
VPS53-212ENST00000572259 PROSER2Q86WR7 435 aaPredicted RBP9.64□□□□□ -0.87
VPS53-212ENST00000572259 NDUFB9Q9Y6M9 179 aa9.64□□□□□ -0.87
VPS53-212ENST00000572259 TLL1O43897 1013 aa9.63□□□□□ -0.87
VPS53-212ENST00000572259 ABL2P42684 1182 aa9.63□□□□□ -0.87
VPS53-212ENST00000572259 FAM160A2Q8N612 972 aaPredicted RBP9.63□□□□□ -0.87
VPS53-212ENST00000572259 ZNF516Q92618 1163 aa9.63□□□□□ -0.87
VPS53-212ENST00000572259 HMX1Q9NP08 348 aaPredicted RBP9.63□□□□□ -0.87
VPS53-212ENST00000572259 SYNJ2O15056 1496 aa9.63□□□□□ -0.87
VPS53-212ENST00000572259 ABCA5Q8WWZ7 1642 aa9.63□□□□□ -0.87
VPS53-212ENST00000572259 TRAK2O60296 914 aa9.62□□□□□ -0.87
VPS53-212ENST00000572259 PNMA1Q8ND90 353 aa9.62□□□□□ -0.87
VPS53-212ENST00000572259 GJD4Q96KN9 370 aaPredicted RBP9.62□□□□□ -0.87
VPS53-212ENST00000572259 NR6A1Q15406 480 aa9.61□□□□□ -0.87
VPS53-212ENST00000572259 PTPRNQ16849 979 aa9.61□□□□□ -0.87
VPS53-212ENST00000572259 TBC1D2BQ9UPU7 963 aa9.61□□□□□ -0.87
VPS53-212ENST00000572259 ERICH3Q5RHP9 1530 aa9.61□□□□□ -0.87
VPS53-212ENST00000572259 KIF27Q86VH2 1401 aa9.6□□□□□ -0.87
VPS53-212ENST00000572259 CTHP32929 405 aa9.6□□□□□ -0.87
VPS53-212ENST00000572259 SLC6A16Q9GZN6 736 aa9.6□□□□□ -0.87
VPS53-212ENST00000572259 TRIM34Q9BYJ4 488 aa9.59□□□□□ -0.87
VPS53-212ENST00000572259 PRDM9Q9NQV7 894 aa9.59□□□□□ -0.87
VPS53-212ENST00000572259 ZNF330Q9Y3S2 320 aaPredicted RBP9.59□□□□□ -0.87
VPS53-212ENST00000572259 FHAD1B1AJZ9 1412 aa9.58□□□□□ -0.88
VPS53-212ENST00000572259 DXOO77932 396 aaKnown RBP9.58□□□□□ -0.88
VPS53-212ENST00000572259 MMP16P51512 607 aa9.58□□□□□ -0.88
VPS53-212ENST00000572259 KCNC4Q03721 635 aa9.58□□□□□ -0.88
VPS53-212ENST00000572259 EPS8L1Q8TE68 723 aa9.58□□□□□ -0.88
VPS53-212ENST00000572259 NUDT12Q9BQG2 462 aa9.58□□□□□ -0.88
VPS53-212ENST00000572259 CCNYL3P0C7X3 344 aa9.57□□□□□ -0.88
VPS53-212ENST00000572259 CCDC24Q8N4L8 307 aa9.57□□□□□ -0.88
VPS53-212ENST00000572259 NKX2-3Q8TAU0 364 aa9.57□□□□□ -0.88
VPS53-212ENST00000572259 PDIA4P13667 645 aaKnown RBP9.56□□□□□ -0.88
VPS53-212ENST00000572259 FNBP4Q8N3X1 1017 aaPredicted RBP9.56□□□□□ -0.88
VPS53-212ENST00000572259 ARID3AQ99856 593 aa9.56□□□□□ -0.88
VPS53-212ENST00000572259 EVA1BQ9NVM1 165 aa9.56□□□□□ -0.88
VPS53-212ENST00000572259 ZNF777Q9ULD5 760 aaPredicted RBP9.56□□□□□ -0.88
VPS53-212ENST00000572259 GRIN2AQ12879 1464 aa9.55□□□□□ -0.88
VPS53-212ENST00000572259 ARID3CA6NKF2 412 aa9.55□□□□□ -0.88
VPS53-212ENST00000572259 MAP10Q9P2G4 905 aa9.55□□□□□ -0.88
VPS53-212ENST00000572259 ADAMTS12P58397 1594 aa9.54□□□□□ -0.88
VPS53-212ENST00000572259 F12P00748 615 aaPredicted RBP9.54□□□□□ -0.88
VPS53-212ENST00000572259 KCNH2Q12809 1159 aa9.54□□□□□ -0.88
VPS53-212ENST00000572259 WASHC4Q2M389 1173 aa9.54□□□□□ -0.88
VPS53-212ENST00000572259 RIMBP3CA6NJZ7 1639 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 RIMBP3BA6NNM3 1639 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 RIMBP3Q9UFD9 1639 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 IGF1RP08069 1367 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 ARHGEF11O15085 1522 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 S1PR4O95977 384 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 ARMC2Q8NEN0 867 aa9.53□□□□□ -0.88
VPS53-212ENST00000572259 ITGBL1O95965 494 aaPredicted RBP9.52□□□□□ -0.89
VPS53-212ENST00000572259 GGCXP38435 758 aa9.52□□□□□ -0.89
VPS53-212ENST00000572259 CYB5RLQ6IPT4 315 aa9.52□□□□□ -0.89
VPS53-212ENST00000572259 FKBPLQ9UIM3 349 aa9.52□□□□□ -0.89
VPS53-212ENST00000572259 CUL7Q14999 1698 aa9.51□□□□□ -0.89
VPS53-212ENST00000572259 CARMIL1Q5VZK9 1371 aa9.51□□□□□ -0.89
VPS53-212ENST00000572259 CLASP1Q7Z460 1538 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms