RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 RNF19BQ6ZMZ0 732 aa11.07□□□□□ -0.64
VPS50-215ENST00000480943 TOPBP1Q92547 1522 aa11.06□□□□□ -0.64
VPS50-215ENST00000480943 GCGRP47871 477 aa11.06□□□□□ -0.64
VPS50-215ENST00000480943 CCDC24Q8N4L8 307 aa11.06□□□□□ -0.64
VPS50-215ENST00000480943 DNMBPQ6XZF7 1577 aa11.06□□□□□ -0.64
VPS50-215ENST00000480943 TULP1O00294 542 aaPredicted RBP11.05□□□□□ -0.64
VPS50-215ENST00000480943 SULF1Q8IWU6 871 aa11.05□□□□□ -0.64
VPS50-215ENST00000480943 EHBP1Q8NDI1 1231 aa11.05□□□□□ -0.64
VPS50-215ENST00000480943 DDX11L8A8MPP1 907 aa11.04□□□□□ -0.64
VPS50-215ENST00000480943 DXOO77932 396 aaKnown RBP11.04□□□□□ -0.64
VPS50-215ENST00000480943 KANK3Q6NY19 840 aa11.04□□□□□ -0.64
VPS50-215ENST00000480943 METTL3Q86U44 580 aaKnown RBP11.04□□□□□ -0.64
VPS50-215ENST00000480943 HIC1Q14526 733 aa11.03□□□□□ -0.64
VPS50-215ENST00000480943 SIAH2O43255 324 aa11.02□□□□□ -0.65
VPS50-215ENST00000480943 MRPL14Q6P1L8 145 aaKnown RBP11.02□□□□□ -0.65
VPS50-215ENST00000480943 GPIHBP1Q8IV16 184 aa11.02□□□□□ -0.65
VPS50-215ENST00000480943 ABCC8Q09428 1581 aa11.01□□□□□ -0.65
VPS50-215ENST00000480943 IFT140Q96RY7 1462 aa11□□□□□ -0.65
VPS50-215ENST00000480943 EIF4G3O43432 1585 aaKnown RBP11□□□□□ -0.65
VPS50-215ENST00000480943 SUPT5HO00267 1087 aaKnown RBP11□□□□□ -0.65
VPS50-215ENST00000480943 USB1Q9BQ65 265 aaKnown RBP11□□□□□ -0.65
VPS50-215ENST00000480943 GPR37O15354 613 aa10.99□□□□□ -0.65
VPS50-215ENST00000480943 ZNF608Q9ULD9 1512 aaPredicted RBP10.99□□□□□ -0.65
VPS50-215ENST00000480943 TARBP1Q13395 1621 aaKnown RBP10.98□□□□□ -0.65
VPS50-215ENST00000480943 GNPATO15228 680 aa10.98□□□□□ -0.65
VPS50-215ENST00000480943 IRS1P35568 1242 aa10.98□□□□□ -0.65
VPS50-215ENST00000480943 PURBQ96QR8 312 aaKnown RBP10.97□□□□□ -0.65
VPS50-215ENST00000480943 MAN1A2O60476 641 aa10.96□□□□□ -0.65
VPS50-215ENST00000480943 ADAM23O75077 832 aa10.96□□□□□ -0.65
VPS50-215ENST00000480943 PSMG3-AS1Q96PY0 264 aa10.96□□□□□ -0.65
VPS50-215ENST00000480943 POLA1P09884 1462 aaPredicted RBP10.95□□□□□ -0.66
VPS50-215ENST00000480943 PPFIA3O75145 1194 aa10.95□□□□□ -0.66
VPS50-215ENST00000480943 CHD1O14646 1710 aa10.95□□□□□ -0.66
VPS50-215ENST00000480943 SVOPQ8N4V2 548 aa10.94□□□□□ -0.66
VPS50-215ENST00000480943 PLEKHG3A1L390 1219 aa10.93□□□□□ -0.66
VPS50-215ENST00000480943 SOBPA7XYQ1 873 aa10.93□□□□□ -0.66
VPS50-215ENST00000480943 MARSP56192 900 aaKnown RBP10.93□□□□□ -0.66
VPS50-215ENST00000480943 SCARF2Q96GP6 870 aaPredicted RBP10.93□□□□□ -0.66
VPS50-215ENST00000480943 WDR97A6NE52 1622 aa10.93□□□□□ -0.66
VPS50-215ENST00000480943 CUX1P39880 1505 aa10.93□□□□□ -0.66
VPS50-215ENST00000480943 CNTNAP3BQ96NU0 1288 aa10.91□□□□□ -0.66
VPS50-215ENST00000480943 CNTNAP3Q9BZ76 1288 aa10.91□□□□□ -0.66
VPS50-215ENST00000480943 FGD5Q6ZNL6 1462 aa10.91□□□□□ -0.66
VPS50-215ENST00000480943 RAD54L2Q9Y4B4 1467 aa10.9□□□□□ -0.66
VPS50-215ENST00000480943 PBRM1Q86U86 1689 aa10.89□□□□□ -0.67
VPS50-215ENST00000480943 MSTNO14793 375 aa10.89□□□□□ -0.67
VPS50-215ENST00000480943 AQRO60306 1485 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS50-215ENST00000480943 ADH1CP00326 375 aa10.88□□□□□ -0.67
VPS50-215ENST00000480943 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS50-215ENST00000480943 NNTQ13423 1086 aa10.87□□□□□ -0.67
VPS50-215ENST00000480943 ZNF385CQ66K41 422 aaPredicted RBP10.87□□□□□ -0.67
VPS50-215ENST00000480943 SOGA1O94964 1423 aa10.86□□□□□ -0.67
VPS50-215ENST00000480943 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.86□□□□□ -0.67
VPS50-215ENST00000480943 BIVM-ERCC5R4GMW8 1640 aa10.86□□□□□ -0.67
VPS50-215ENST00000480943 KRT76Q01546 638 aa10.85□□□□□ -0.67
VPS50-215ENST00000480943 MPNDQ8N594 471 aa10.85□□□□□ -0.67
VPS50-215ENST00000480943 KRTAP9-2Q9BYQ4 174 aa10.85□□□□□ -0.67
VPS50-215ENST00000480943 RIMBP3CA6NJZ7 1639 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 RIMBP3BA6NNM3 1639 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 RIMBP3Q9UFD9 1639 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 SLC24A1O60721 1099 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 TIMP2P16035 220 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 JUNDP17535 347 aa10.84□□□□□ -0.67
VPS50-215ENST00000480943 WDR4P57081 412 aaKnown RBP10.84□□□□□ -0.67
VPS50-215ENST00000480943 MAP2K5Q13163 448 aa10.83□□□□□ -0.68
VPS50-215ENST00000480943 SYNJ1O43426 1573 aa10.82□□□□□ -0.68
VPS50-215ENST00000480943 TDRD9Q8NDG6 1382 aaKnown RBP10.82□□□□□ -0.68
VPS50-215ENST00000480943 TOP2BQ02880 1626 aa10.82□□□□□ -0.68
VPS50-215ENST00000480943 ABCA5Q8WWZ7 1642 aa10.82□□□□□ -0.68
VPS50-215ENST00000480943 UPP2O95045 317 aa10.81□□□□□ -0.68
VPS50-215ENST00000480943 SH3BP2P78314 561 aa10.81□□□□□ -0.68
VPS50-215ENST00000480943 NUDT12Q9BQG2 462 aa10.81□□□□□ -0.68
VPS50-215ENST00000480943 COL25A1Q9BXS0 654 aaPredicted RBP10.81□□□□□ -0.68
VPS50-215ENST00000480943 SNAPC4Q5SXM2 1469 aa10.81□□□□□ -0.68
VPS50-215ENST00000480943 KRTAP9-6A0A140TA67 174 aa10.8□□□□□ -0.68
VPS50-215ENST00000480943 ARHGEF15O94989 841 aa10.8□□□□□ -0.68
VPS50-215ENST00000480943 TLL2Q9Y6L7 1015 aa10.79□□□□□ -0.68
VPS50-215ENST00000480943 VARSP26640 1264 aaKnown RBP10.78□□□□□ -0.68
VPS50-215ENST00000480943 NLRP7Q8WX94 980 aa10.78□□□□□ -0.68
VPS50-215ENST00000480943 PHOX2BQ99453 314 aa10.78□□□□□ -0.68
VPS50-215ENST00000480943 ARHGEF11O15085 1522 aa10.78□□□□□ -0.68
VPS50-215ENST00000480943 ABCA10Q8WWZ4 1543 aa10.78□□□□□ -0.68
VPS50-215ENST00000480943 GRIN2BQ13224 1484 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 MAGI1Q96QZ7 1491 aaPredicted RBP10.77□□□□□ -0.69
VPS50-215ENST00000480943 IRF6O14896 467 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 SLURP2P0DP57 97 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 USP46P62068 366 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 C6orf118Q5T5N4 469 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 GPR161Q8N6U8 529 aaKnown RBP10.77□□□□□ -0.69
VPS50-215ENST00000480943 GALNT6Q8NCL4 622 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 SPOCK3Q9BQ16 436 aa10.77□□□□□ -0.69
VPS50-215ENST00000480943 MINK1Q8N4C8 1332 aaPredicted RBP10.77□□□□□ -0.69
VPS50-215ENST00000480943 WRNQ14191 1432 aaPredicted RBP eCLIP10.76□□□□□ -0.69
VPS50-215ENST00000480943 GAPVD1Q14C86 1478 aa10.76□□□□□ -0.69
VPS50-215ENST00000480943 KDM4AO75164 1064 aa10.76□□□□□ -0.69
VPS50-215ENST00000480943 Q8N3U1 123 aa10.76□□□□□ -0.69
VPS50-215ENST00000480943 PLA2G4EQ3MJ16 856 aa10.75□□□□□ -0.69
VPS50-215ENST00000480943 PTCRAQ6ISU1 281 aaPredicted RBP10.75□□□□□ -0.69
VPS50-215ENST00000480943 KRTAP1-3Q8IUG1 177 aa10.75□□□□□ -0.69
VPS50-215ENST00000480943 CCDC102AQ96A19 550 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms