RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Lrrc9Q8CDN9 1456 aa18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Gapvd1Q6PAR5 1458 aa18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 AlkP97793 1621 aa18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Adamts12Q811B3 1600 aa18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 CrebrfQ8CDG5 640 aaKnown RBP18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Smc4Q8CG47 1286 aa18.93■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Adgrl2Q8JZZ7 1487 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Trim30aP15533 496 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Mphosph10Q810V0 681 aaKnown RBP18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 R3hcc1Q8BSI6 488 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Q3UJC8 639 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Sptbn5F6UCX4 1208 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Zranb3Q6NZP1 1069 aa18.92■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Cspp1B2RX88 1205 aa18.91■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Arhgef11Q68FM7 1552 aa18.91■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Glipr1l2Q9CQ35 332 aa18.91■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Fmnl2A2APV2 1086 aa18.9■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Fkbp4P30416 458 aa18.9■□□□□ 0.62
Ccdc88b-201ENSMUST00000113440 Ppp1r15aP17564 657 aa18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Sirt1Q923E4 737 aa18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Neurod6P48986 337 aa18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 TmpoQ61033 693 aaKnown RBP18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Unc13aQ4KUS2 1712 aa18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 MvpQ9EQK5 861 aa18.89■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Cfap74Q3UY96 1578 aa18.88■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Plekhm2Q80TQ5 1018 aa18.88■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 GphnQ8BUV3 769 aaKnown RBP18.88■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Q8C5K5 320 aa18.88■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Mcm2P97310 904 aa18.87■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gimap6Q8K349 305 aa18.87■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 CarsQ9ER72 831 aaKnown RBP18.87■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Aldh1l1Q8R0Y6 902 aa18.86■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Atf7ipQ7TT18 1306 aa18.86■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Zpr1Q62384 459 aa18.86■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Abcc6Q9R1S7 1498 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gnai2P08752 355 aaKnown RBP18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 CastP51125 788 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Mcm10Q0VBD2 885 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Supt6hQ62383 1726 aaKnown RBP18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Rusc2Q80U22 1514 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Erbb3Q61526 1339 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Fbxo2Q80UW2 297 aa18.85■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gpatch11Q3UFS4 262 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 KinQ8K339 391 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Stk3Q9JI10 497 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Pbrm1Q8BSQ9 1634 aaKnown RBP18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gm21698A0A087WQP8 267 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Map7d2A2AG50 781 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gm21671G3UY31 267 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gas2l2Q5SSG4 860 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Ipo4Q8VI75 1082 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 PogkQ80TC5 607 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Nol12Q8BG17 217 aa18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Tfip11Q9ERA6 838 aaKnown RBP18.84■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Erc2Q6PH08 957 aa18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Tpm3-rs7D3Z2H9 248 aa18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Ddx11Q6AXC6 880 aa18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Rrp9Q91WM3 475 aaKnown RBP18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Gcc1Q9D4H2 778 aa18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 TnikP83510 1323 aa18.83■□□□□ 0.61
Ccdc88b-201ENSMUST00000113440 Duxf3A0A0N4SV92 674 aa18.83■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Dnai2A2AC93 623 aa18.83■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Zkscan2G3X952 960 aa18.83■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Q3UPC7 1272 aa18.83■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Cnnm1Q0GA42 951 aa18.82■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Nphp1Q9QY53 687 aa18.82■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 1700010I14RikQ7TPG0 532 aa18.82■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Gm10563F6WIE4 79 aa18.82■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Kdm6bQ5NCY0 1641 aa18.81■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Bcl11bQ99PV8 884 aa18.81■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Cwc27Q3TKY6 469 aa18.81■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 NinlQ6ZQ12 1394 aa18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Abcc2Q8VI47 1543 aa18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 PsapQ61207 557 aaKnown RBP18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Idi2Q8BFZ6 227 aa18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Srgap3Q812A2 1099 aa18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 TefQ9JLC6 301 aa18.8■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Ubap1lG3UW59 384 aa18.79■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Ccer1Q9CQL2 403 aa18.79■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 BcanQ61361 883 aa18.79■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Egfem1Q8C088 590 aa18.79■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Sf3a1Q8K4Z5 791 aaKnown RBP18.79■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Sbno1Q689Z5 1390 aa18.78■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Aplp1Q03157 653 aa18.78■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Smarca5Q91ZW3 1051 aaKnown RBP18.78■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Dennd4bQ3U1Y4 1499 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Fmn2Q9JL04 1578 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 InsrP15208 1372 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Rnf20Q5DTM8 973 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Ssh1Q76I79 1042 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Sos1Q62245 1319 aa18.77■□□□□ 0.6
Ccdc88b-201ENSMUST00000113440 Nap1l3Q794H2 544 aa18.76■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Ppp1r9bQ6R891 817 aaKnown RBP18.76■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 NexnQ7TPW1 607 aa18.76■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 TkfcQ8VC30 578 aa18.76■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Smc3Q9CW03 1217 aaKnown RBP18.76■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Gripap1Q8VD04 806 aa18.75■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Exoc6bA6H5Z3 810 aa18.75■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Ccne1Q61457 408 aa18.75■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Tpm2P58774 284 aa18.74■□□□□ 0.59
Retrieved 100 of 22,080 RNA–protein pairs in 13.3 ms