RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GABRB2P47870 512 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ST13P50502 369 aaKnown RBP13.1□□□□□ -0.31
COL3A1-201ENST00000304636 TKTL1P51854 596 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 NEK3P51956 506 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 MGAT5BQ3V5L5 792 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 FAM126BQ8IXS8 530 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 TLCD1Q96CP7 247 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CLPBQ9H078 707 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 ASB7Q9H672 318 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 AP4B1Q9Y6B7 739 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 PREX1Q8TCU6 1659 aa13.1□□□□□ -0.31
COL3A1-201ENST00000304636 CTSHP09668 335 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ERVK-10P10266 1014 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 RXRGP48443 463 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 CCNG1P51959 295 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 PSME3P61289 254 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 HPCAP84074 193 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SPANXN2Q5MJ10 180 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ANKS6Q68DC2 871 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 CYP4Z1Q86W10 505 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 FAM136AQ96C01 138 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 PRMT6Q96LA8 375 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 NT5MQ9NPB1 228 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SPAG4Q9NPE6 437 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 GAKO14976 1311 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 JCADQ9P266 1359 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 A0A1W2PPM1 405 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 PTGES3LE9PB15 166 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ADCY6O43306 1168 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 CYP1A1P04798 512 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 HOXB8P17481 243 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 BROXQ5VW32 411 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 BBS12Q6ZW61 710 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 FITM2Q8N6M3 262 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 AGBL3Q8NEM8 1001 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ACTRT2Q8TDY3 377 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 CPB2Q96IY4 423 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 TBL1YQ9BQ87 522 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 RGS18Q9NS28 235 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 A0A0A0MRY4 1105 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ASMTLO95671 621 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ADRB2P07550 413 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 VAV1P15498 845 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 LHX1P48742 406 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SLC11A2P49281 568 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 YWHAZP63104 245 aaKnown RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 BFSP2Q13515 415 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ADCK2Q7Z695 626 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 OR56A4Q8NGH8 313 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 PTCD3Q96EY7 689 aaKnown RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SPATA13Q96N96 652 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 AP3M1Q9Y2T2 418 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 MYOM1P52179 1685 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 DPYSL4O14531 572 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SNAP91O60641 907 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 BANF1O75531 89 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 PSMD10O75832 226 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 POU1F1P28069 291 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 CHI3L1P36222 383 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ZNF177Q13360 481 aaPredicted RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 FBXO47Q5MNV8 452 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 TDRD10Q5VZ19 366 aaKnown RBP13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SPATA16Q9BXB7 569 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 ROGDIQ9GZN7 287 aa13.09□□□□□ -0.31
COL3A1-201ENST00000304636 SHPRHQ149N8 1683 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 F5H5T6 163 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 CD3EAPO15446 510 aaKnown RBP13.08□□□□□ -0.31
COL3A1-201ENST00000304636 CPSF4O95639 269 aaKnown RBP13.08□□□□□ -0.31
COL3A1-201ENST00000304636 SNRPB2P08579 225 aaKnown RBP13.08□□□□□ -0.31
COL3A1-201ENST00000304636 MAPK10P53779 464 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 CSE1LP55060 971 aaKnown RBP13.08□□□□□ -0.31
COL3A1-201ENST00000304636 NR1D2Q14995 579 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 TAF5Q15542 800 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 INAQ16352 499 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 TTC23Q5W5X9 447 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 FAM163AQ96GL9 167 aaPredicted RBP13.08□□□□□ -0.31
COL3A1-201ENST00000304636 ENOPH1Q9UHY7 261 aa13.08□□□□□ -0.31
COL3A1-201ENST00000304636 TBKBP1A7MCY6 615 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ALOX12P18054 663 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 FECHP22830 423 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 GRIA3P42263 894 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 DMPKQ09013 629 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 HYIQ5T013 277 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 GLB1LQ6UWU2 654 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 FAM228AQ86W67 206 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 PLEKHG4BQ96PX9 1271 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 IL22Q9GZX6 179 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 CDHR5Q9HBB8 845 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 SCUBE2Q9NQ36 999 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 MTF2Q9Y483 593 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ZMPSTE24O75844 475 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 MFN2O95140 757 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ANXA11P50995 505 aaKnown RBP13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ZNF143P52747 638 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-201ENST00000304636 DDX39BQ13838 428 aaKnown RBP13.08□□□□□ -0.32
COL3A1-201ENST00000304636 POLD3Q15054 466 aaPredicted RBP13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ATP13A4Q4VNC1 1196 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 ILDR2Q71H61 639 aa13.08□□□□□ -0.32
COL3A1-201ENST00000304636 SCUBE3Q8IX30 993 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms