RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PPFIBP2Q8ND30 876 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ACVR1CQ8NER5 493 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ADAM32Q8TC27 787 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 GATA6Q92908 595 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 AGAP2Q99490 1192 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 PRDM12Q9H4Q4 367 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 TUT1Q9H6E5 874 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SETD4Q9NVD3 440 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 PCDHB8Q9UN66 801 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SOX13Q9UN79 622 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CCDC78A2IDD5 438 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 F8W8V4 182 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FAM72CH0Y354 149 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 GOLGA8TH3BQL2 631 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF195O14628 629 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SMIM24O75264 130 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 GLRA3O75311 464 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CIB2O75838 187 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 RECQL4O94761 1208 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 PROCP04070 461 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SETSIPP0DME0 302 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 AOC1P19801 751 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ACAT1P24752 427 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 TYK2P29597 1187 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 NR2C2P49116 596 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 IRF9Q00978 393 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 BST2Q10589 180 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 NME3Q13232 169 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 TTLL12Q14166 644 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 LBRQ14739 615 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ZBTB6Q15916 424 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 GRIK4Q16099 956 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 DNAL1Q4LDG9 190 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 DCAF6Q58WW2 860 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FAM72AQ5TYM5 149 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SYPL2Q5VXT5 272 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 C9orf57Q5W0N0 161 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 LPCAT4Q643R3 524 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FAM72DQ6L9T8 149 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 LRRC8BQ6P9F7 803 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 NAPRTQ6XQN6 538 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 KYAT3Q6YP21 454 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 HFE2Q6ZVN8 426 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 RASSF3Q86WH2 238 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FAM72BQ86X60 149 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 OR52K1Q8NGK4 314 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 RAB3IL1Q8TBN0 382 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 IFT43Q96FT9 208 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SNX27Q96L92 541 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 PPP1R36Q96LQ0 422 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 OSMRQ99650 979 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 GORASP1Q9BQQ3 440 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ANLNQ9NQW6 1124 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CACNG4Q9UBN1 327 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 MORF4L1Q9UBU8 362 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 FZD10Q9ULW2 581 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 RPS6KL1Q9Y6S9 549 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 I6L893 689 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 GNAT1P11488 350 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ZFXP17010 805 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 PGAM1P18669 254 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 NCF2P19878 526 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 GNL1P36915 607 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ARL4AP40617 200 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CCR10P46092 362 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 BCAT1P54687 386 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SOX4Q06945 474 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CDC16Q13042 620 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 LAMC2Q13753 1193 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TRMT5Q32P41 509 aaKnown RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TCHHL1Q5QJ38 904 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ARHGAP17Q68EM7 881 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 PIGZQ86VD9 579 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SPNS2Q8IVW8 549 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 GPC2Q8N158 579 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 DCLK2Q8N568 766 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF781Q8N8C0 355 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ANKRD52Q8NB46 1076 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 MAPK15Q8TD08 544 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 RNF139Q8WU17 664 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 APOL2Q9BQE5 337 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 EBF3Q9H4W6 596 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SNX15Q9NRS6 342 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 NDE1Q9NXR1 346 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 COPG2Q9UBF2 871 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 SCOCQ9UIL1 159 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ANGPTL2Q9UKU9 493 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 APOBEC2Q9Y235 224 aaKnown RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ASB3Q9Y575 518 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 TTC3P53804 2025 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 DCXO43602 365 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 BUD23O43709 281 aaKnown RBP7.69□□□□□ -1.18
LIMA1-213ENST00000552720 ZBTB14O43829 449 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 RALBP11234 206 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 DESP17661 470 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 CNTFP26441 200 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 MATKP42679 507 aa7.69□□□□□ -1.18
LIMA1-213ENST00000552720 AP2B1P63010 937 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms