RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TMIEQ8NEW7 156 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 RFT1Q96AA3 541 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 HEPHQ9BQS7 1158 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 NOL11Q9H8H0 719 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 SPAG4Q9NPE6 437 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 FAIMQ9NVQ4 179 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 ABCC1P33527 1531 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 PIK3CGP48736 1102 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 POU4F1Q01851 419 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 PLCL1Q15111 1095 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 HAGHLQ6PII5 290 aaPredicted RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 ARMCX2Q7L311 632 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 PTAR1Q7Z6K3 402 aaPredicted RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 RBM15BQ8NDT2 890 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 SLC7A3Q8WY07 619 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 LGR6Q9HBX8 967 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 GPN1Q9HCN4 374 aaPredicted RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 CYP4F12Q9HCS2 524 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 NKX1-2Q9UD57 310 aaPredicted RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 CIAO1O76071 339 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 EYA4O95677 639 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 FADS2O95864 444 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 TFPTP0C1Z6 253 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 PSMA3P25788 255 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 VARSP26640 1264 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 CAPGP40121 348 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 RFWD3Q6PCD5 774 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 C1QTNF1Q9BXJ1 281 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 OSGEPQ9NPF4 335 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 SHOC2Q9UQ13 582 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 DFFAO00273 331 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 PRPF4O43172 522 aaKnown RBP eCLIP8.93□□□□□ -0.98
YBX3-208ENST00000540447 THEGLP0DJG4 465 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 AKT1P31749 480 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 CLK3P49761 638 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 PRKAA2P54646 552 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 LSAMPQ13449 338 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 ABCB5Q2M3G0 1257 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 POTEHQ6S545 545 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 ZFP42Q96MM3 310 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 TRNT1Q96Q11 434 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 CIB1Q99828 191 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 CADM1Q9BY67 442 aaKnown RBP8.93□□□□□ -0.98
YBX3-208ENST00000540447 KCNE2Q9Y6J6 123 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 GRIN2DO15399 1336 aa8.93□□□□□ -0.98
YBX3-208ENST00000540447 DHRS12A0PJE2 317 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 FAM220BPB1ANY3 271 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 AGPSO00116 658 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 KHDRBS3O75525 346 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 CYP7B1O75881 506 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 SOAT1P35610 550 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 FAAP100Q0VG06 881 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 FRG1Q14331 258 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 CDCA2Q69YH5 1023 aaPredicted RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 CYP4Z1Q86W10 505 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 AMIGO1Q86WK6 493 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ZNF614Q8N883 585 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 RP9Q8TA86 221 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 GAL3ST3Q96A11 431 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 SH3PXD2BA1X283 911 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 UBAP1LF5GYI3 381 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 MT-CO1P00395 513 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ARF4P18085 180 aaPredicted RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 ZBED5Q49AG3 693 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ANKRD13AQ8IZ07 590 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 TEX47Q8TBZ9 253 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 TOP1MTQ969P6 601 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 STN1Q9H668 368 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 NDUFAF4Q9P032 175 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 TBC1D24Q9ULP9 559 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ZNF451Q9Y4E5 1061 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ARHGEF10O15013 1369 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 CCDC154A6NI56 674 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 PRR5-ARHGAP8B1AHC4 643 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 RIMBP2O15034 1052 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 NTRK1P04629 796 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 MLNP12872 115 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 AZGP1P25311 298 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 CD97P48960 835 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 BCAMP50895 628 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ARHGAP8P85298 464 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 DNASE1L3Q13609 305 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 IL18Q14116 193 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ZC3H12AQ5D1E8 599 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 GJB7Q6PEY0 223 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 KYAT3Q6YP21 454 aaKnown RBP8.92□□□□□ -0.98
YBX3-208ENST00000540447 HPS6Q86YV9 775 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ACTRT2Q8TDY3 377 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 EEF1AKMT1Q8WVE0 214 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 DCAF5Q96JK2 942 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 TMEM246Q9BRR3 403 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 CDH22Q9UJ99 828 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 TMEM5Q9Y2B1 443 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 USP20Q9Y2K6 914 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 RPS6KL1Q9Y6S9 549 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 ARHGEF11O15085 1522 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 VAPBO95292 243 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 PSKH1P11801 424 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 SSTR1P30872 391 aa8.92□□□□□ -0.98
YBX3-208ENST00000540447 EIF2S3LQ2VIR3 472 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms