RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 DHX36Q9H2U1 1008 aaKnown RBP6.88□□□□□ -1.31
USP28-202ENST00000535607 SEMA4AQ9H3S1 761 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TLE6Q9H808 572 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SMURF1Q9HCE7 757 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 MYOZ2Q9NPC6 264 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 HOMER2Q9NSB8 354 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 BLOC1S4Q9NUP1 217 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 GPRC5DQ9NZD1 345 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 ZFP69BQ9UJL9 534 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 TRAF3IP3Q9Y228 551 aa6.88□□□□□ -1.31
USP28-202ENST00000535607 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP28-202ENST00000535607 FRMPD4Q14CM0 1322 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 SMIM31A0A1B0GVY4 71 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 GSTTP1A0A1W2PQM5 241 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TCRBV5S2A0A599 114 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 F8W8V4 182 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 MAN2B1O00754 1011 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PRPF4O43172 522 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP28-202ENST00000535607 EXOC3O60645 756 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ULK1O75385 1050 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TMCC1O94876 653 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PAPLNO95428 1278 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ABHD2P08910 425 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ALAS1P13196 640 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ATF2P15336 505 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 GAP43P17677 238 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 YY1P25490 414 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PON1P27169 355 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PSMC2P35998 433 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 COILP38432 576 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 RPL21P46778 160 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 LSSP48449 732 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 GMPSP49915 693 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 RBM5P52756 815 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP28-202ENST00000535607 AP2B1P63010 937 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 GPC5P78333 572 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 NKX3-2P78367 333 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ZNF200P98182 395 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 TFAP4Q01664 338 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PPATQ06203 517 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TMED1Q13445 227 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ITGA9Q13797 1035 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 RRP1BQ14684 758 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 KNOP1Q1ED39 458 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 HABP4Q5JVS0 413 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 HYIQ5T013 277 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 MAP3K21Q5TCX8 1036 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TCERG1LQ5VWI1 586 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 SNX30Q5VWJ9 437 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 CDC42EP5Q6NZY7 148 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 LRRC74BQ6ZQY2 392 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ECHDC2Q86YB7 292 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 APOBEC3FQ8IUX4 373 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 WDR48Q8TAF3 677 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TBCKQ8TEA7 893 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 SH3RF3Q8TEJ3 882 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 ERP27Q96DN0 273 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 TOE1Q96GM8 510 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 LIN37Q96GY3 246 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 MTMR9Q96QG7 549 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ZNF184Q99676 751 aaPredicted RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 ZSWIM1Q9BR11 485 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 MMTAG2Q9BU76 263 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 TBC1D10AQ9BXI6 508 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 MYLK2Q9H1R3 596 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 LRRC19Q9H756 370 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ACSS2Q9NR19 701 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 KCNH7Q9NS40 1196 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 GRHL1Q9NZI5 618 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ANKFY1Q9P2R3 1169 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 ASIC3Q9UHC3 531 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PHTF1Q9UMS5 762 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 NENFQ9UMX5 172 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 MTO1Q9Y2Z2 717 aaKnown RBP6.87□□□□□ -1.31
USP28-202ENST00000535607 PPP2R3BQ9Y5P8 575 aa6.87□□□□□ -1.31
USP28-202ENST00000535607 PLIN4Q96Q06 1357 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 BAZ2AQ9UIF9 1905 aaKnown RBP6.86□□□□□ -1.31
USP28-202ENST00000535607 UBE4BO95155 1302 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 GLTPD2A6NH11 291 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 KLRF2D3W0D1 207 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 WNT10BO00744 389 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 GYG2O15488 501 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 PFDN1O60925 122 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 ATP9AO75110 1047 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 COQ9O75208 318 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 FKBP6O75344 327 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 TBCAO75347 108 aaKnown RBP6.86□□□□□ -1.31
USP28-202ENST00000535607 TJP3O95049 919 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 AMY2AP04746 511 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 HLA-DOAP06340 250 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 PLA2G4BP0C869 781 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 ZBTB48P10074 688 aaPredicted RBP6.86□□□□□ -1.31
USP28-202ENST00000535607 PTPN1P18031 435 aaKnown RBP6.86□□□□□ -1.31
USP28-202ENST00000535607 ITGB5P18084 799 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 VCAM1P19320 739 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 AMY2BP19961 511 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 FGFR4P22455 802 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 SLCO1A2P46721 670 aa6.86□□□□□ -1.31
USP28-202ENST00000535607 MECP2P51608 486 aaKnown RBP6.86□□□□□ -1.31
USP28-202ENST00000535607 PSMD7P51665 324 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms