RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TRANK1O15050 2925 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 TLR5O60602 858 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 ZFXP17010 805 aaPredicted RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 GLUD2P49448 558 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 CAV1Q03135 178 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 SCAPQ12770 1279 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 SPARCL1Q14515 664 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 FAM76AQ8TAV0 307 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 ALG13Q9NP73 1137 aaKnown RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 RRN3Q9NYV6 651 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 MARCH2Q9P0N8 246 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 CHMP2BQ9UQN3 213 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 GOLGA6L7A0A1B0GV03 622 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 RNF103O00237 685 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 GJB5O95377 273 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 TUBP50607 506 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 TBX4P57082 545 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 MAGOHP61326 146 aaKnown RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 TERF2Q15554 542 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PIK3R6Q5UE93 754 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.99■□□□□ 0.31
USP4-201ENST00000265560 SPG21Q9NZD8 308 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PRUNE2Q8WUY3 3088 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PTPRSQ13332 1948 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 GOLGA8KD6RF30 607 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 TRDMT1O14717 391 aaKnown RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 NR2C2P49116 596 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 CRADDP78560 199 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 EIF4EBP2Q13542 120 aaPredicted RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 ANKRD20A2Q5SQ80 823 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 ANKRD20A1Q5TYW2 823 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 ANKRD20A3Q5VUR7 823 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 ARHGEF18Q6ZSZ5 1173 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PSTKQ8IV42 348 aaKnown RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 CDKL3Q8IVW4 592 aaPredicted RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 AGGF1Q8N302 714 aaeCLIP16.99■□□□□ 0.31
USP4-201ENST00000265560 ZNF461Q8TAF7 563 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 MYEOVQ96EZ4 313 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 QKIQ96PU8 341 aaKnown RBP eCLIP16.99■□□□□ 0.31
USP4-201ENST00000265560 TLR8Q9NR97 1041 aaKnown RBP16.99■□□□□ 0.31
USP4-201ENST00000265560 UBP1Q9NZI7 540 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PRKAG2Q9UGJ0 569 aa16.99■□□□□ 0.31
USP4-201ENST00000265560 PRRG1O14668 218 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 EFEMP2O95967 443 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 RFC2P35250 354 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 PLD1Q13393 1074 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 TAF12Q16514 161 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 LRIG3Q6UXM1 1119 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 NACA2Q9H009 215 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 IL23AQ9NPF7 189 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 GKN1Q9NS71 199 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 POC1B-GALNT4F8VUJ3 575 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 USP12O75317 370 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 FGBP02675 491 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 EFTUD2Q15029 972 aaKnown RBP eCLIP16.98■□□□□ 0.31
USP4-201ENST00000265560 RAP1GAP2Q684P5 730 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 TRMT10CQ7L0Y3 403 aaKnown RBP16.98■□□□□ 0.31
USP4-201ENST00000265560 RNF168Q8IYW5 571 aaPredicted RBP16.98■□□□□ 0.31
USP4-201ENST00000265560 SCML4Q8N228 414 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 ARHGEF38Q9NXL2 777 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 SHOC2Q9UQ13 582 aa16.98■□□□□ 0.31
USP4-201ENST00000265560 E7EVH7 732 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 RASGRF2O14827 1237 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 CNTN5O94779 1100 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 URODP06132 367 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 NUDT17P0C025 328 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 CREB1P16220 341 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 LEKR1Q6ZMV7 388 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 PID1Q7Z2X4 250 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 FBXO36Q8NEA4 188 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 CYP2S1Q96SQ9 504 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 PAK5Q9P286 719 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 RCOR3Q9P2K3 495 aaPredicted RBP16.97■□□□□ 0.31
USP4-201ENST00000265560 TEX28O15482 410 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 FGF18O76093 207 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 IRF1P10914 325 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 PSMB4P28070 264 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 WASHC5Q12768 1159 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 CENPUQ71F23 418 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 VSIG1Q86XK7 387 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 ZNF567Q8N184 647 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 CFAP52Q8N1V2 620 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 PDCD7Q8N8D1 485 aaKnown RBP16.97■□□□□ 0.31
USP4-201ENST00000265560 PYROXD1Q8WU10 500 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 SERPINB11Q96P15 392 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 SMPD4Q9NXE4 827 aa16.97■□□□□ 0.31
USP4-201ENST00000265560 MYOGP15173 224 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 RPL10AP62906 217 aaKnown RBP16.96■□□□□ 0.31
USP4-201ENST00000265560 DSG1Q02413 1049 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 KCNJ11Q14654 390 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 PAFAH1B3Q15102 231 aaKnown RBP16.96■□□□□ 0.31
USP4-201ENST00000265560 RFWD3Q6PCD5 774 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 CYP4X1Q8N118 509 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 KLHL23Q8NBE8 558 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 MDM1Q8TC05 714 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 NEU3Q9UQ49 428 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 KCNU1A8MYU2 1149 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 E9PAM4 449 aa16.96■□□□□ 0.31
USP4-201ENST00000265560 RTN3O95197 1032 aaPredicted RBP16.96■□□□□ 0.31
USP4-201ENST00000265560 ELK3P41970 407 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms