RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 C2orf71A6NGG8 1288 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 ENO4A6NNW6 628 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 E7ESA3 106 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 PITPNM1O00562 1244 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 INPPL1O15357 1258 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 GSC2O15499 205 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 CST8O60676 142 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 HNRNPCL1O60812 293 aaKnown RBP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 HUS1O60921 280 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 WARSP23381 471 aaKnown RBP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 IL1R2P27930 398 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 PBX3P40426 434 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 PNPLA4P41247 253 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 GABRB2P47870 512 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 IRX1P78414 480 aaPredicted RBP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 DSC1Q08554 894 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 LRRC26Q2I0M4 334 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 KLHL38Q2WGJ6 581 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 ACSBG2Q5FVE4 666 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 CTU1Q7Z7A3 348 aaKnown RBP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 LRRTM3Q86VH5 581 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 UNC93AQ86WB7 457 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 SCUBE3Q8IX30 993 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 PALM2Q8IXS6 379 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 TOP6BLQ8N6T0 577 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 NIPA2Q8N8Q9 360 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 TSPAN18Q96SJ8 248 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 SYT15Q9BQS2 421 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 TSSK1BQ9BXA7 367 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 TRIM55Q9BYV6 548 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 HIPK3Q9H422 1215 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 ZWILCHQ9H900 591 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 SLC38A7Q9NVC3 462 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 TMLHEQ9NVH6 421 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 NMRK1Q9NWW6 199 aa8.89□□□□□ -0.99
TRIM55-204ENST00000353317 DDX56Q9NY93 547 aaKnown RBP8.89□□□□□ -0.99
TRIM55-204ENST00000353317 COL4A6Q14031 1691 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SIGLEC16A6NMB1 481 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 MED7O43513 233 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 LRCH4O75427 683 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 HAUS5O94927 633 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 CD48P09326 243 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 DLDP09622 509 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 TFE3P19532 575 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ETV4P43268 484 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SLC25A11Q02978 314 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 TUSC3Q13454 348 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 BBS9Q3SYG4 887 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 FAM182AQ5T1J6 154 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 FBXO46Q6PJ61 603 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 FAM183BPQ6ZVS7 135 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 IGDCC3Q8IVU1 814 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 UNC45BQ8IWX7 931 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 LMNTD2Q8IXW0 634 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 COLGALT2Q8IYK4 626 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 B3GALNT2Q8NCR0 500 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 NRG4Q8WWG1 115 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SKA1Q96BD8 255 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ALKBH8Q96BT7 664 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 FAM136AQ96C01 138 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 MCRS1Q96EZ8 462 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SERAC1Q96JX3 654 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 PHACTR1Q9C0D0 580 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SNX25Q9H3E2 840 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 METTL5Q9NRN9 209 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 DDX43Q9NXZ2 648 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ATP11BQ9Y2G3 1177 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 PTPRSQ13332 1948 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ALPK3Q96L96 1907 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 EME2A4GXA9 379 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 NDC80O14777 642 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 GYG2O15488 501 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 PAPSS1O43252 624 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 LPXNO60711 386 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 KRT36O76013 467 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 EOMESO95936 686 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 LMNAP02545 664 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 DHRS4L1P0CG22 281 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 PTPN1P18031 435 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 GJA8P48165 433 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 NDUFV1P49821 464 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ARFIP2P53365 341 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 MRPS35P82673 323 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 BFSP2Q13515 415 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 KPNB1Q14974 876 aaKnown RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 PRKD1Q15139 912 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 RCN1Q15293 331 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 TSNAXIP1Q2TAA8 658 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 MUM1Q2TAK8 710 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ARHGAP17Q68EM7 881 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 RINLQ6ZS11 566 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 SH2D5Q6ZV89 423 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 POLNQ7Z5Q5 900 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 TTC7BQ86TV6 843 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 TMEM173Q86WV6 379 aaPredicted RBP8.88□□□□□ -0.99
TRIM55-204ENST00000353317 OR10T2Q8NGX3 314 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 WDR60Q8WVS4 1066 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 RSAD2Q8WXG1 361 aa8.88□□□□□ -0.99
TRIM55-204ENST00000353317 ARMC5Q96C12 935 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms