RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Lyve1Q8BHC0 318 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Trim35Q8C006 501 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Mtss1Q8R1S4 759 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Rnaseh2aQ9CWY8 301 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Arhgap8Q9CXP4 425 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Krt20Q9D312 431 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Ccdc86Q9JJ89 426 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 TfebQ9R210 475 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Fzd9Q9R216 592 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 LipaQ9Z0M5 397 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Zfp236S4R299 1847 aa16.89■□□□□ 0.29
Shh-201ENSMUST00000002708 Gm10722F6VLK5 217 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 StrnO55106 780 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 ShdO88834 343 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Abcb1bP06795 1276 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Bop1P97452 732 aaKnown RBP16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Xkr4Q5GH67 647 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Trim38Q5SZ99 471 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Ino80dQ66JY2 873 aaKnown RBP16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 NaprtQ8CC86 538 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Celf3Q8CIN6 465 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Alas1Q8VC19 642 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Lypd3Q91YK8 363 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Commd8Q9CZG3 183 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Rsph3bQ9DA80 389 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tmem131O70472 1877 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Ralgapa2A3KGS3 1872 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 B020004C17RikJ3QP07 232 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tnfrsf11bO08712 401 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Sptlc1O35704 473 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Soat2O88908 525 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Lmo2P25801 158 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tbxas1P36423 533 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Esyt3Q5DTI8 891 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tcaf3Q6QR59 914 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Stk32aQ8BGW6 398 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Bmt2Q8BXK4 403 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Aph1bQ8C7N7 257 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 FtcdQ91XD4 541 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 NonoQ99K48 473 aaKnown RBP16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Ap2b1Q9DBG3 937 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Slc29a1Q9JIM1 460 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tnfrsf14A0A1W2P7D5 276 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Mroh4G3X8W1 983 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Syngr1O55100 234 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Dact3Q0PHV7 610 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Nxpe4Q52KP5 543 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Klra8Q60682 266 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 GapdhsQ64467 440 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Tmem260Q8BMD6 703 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 AA792892Q8C6S1 278 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Rmnd1Q8CI78 450 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Prpsap2Q8R574 369 aa16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Mtif2Q91YJ5 727 aaKnown RBP16.88■□□□□ 0.29
Shh-201ENSMUST00000002708 Adamts6D3Z1A5 1117 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Vmn2r72D3Z4N8 856 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Gm7694J3QNH8 270 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Cbfa2t2O70374 594 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Cd2P08920 344 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 TxnP10639 105 aaKnown RBP16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 PrkcdP28867 674 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 PolgP54099 1218 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Oaz1P54369 227 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 NrlP54846 237 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Atp6v1b2P62814 511 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 HmgcrQ01237 887 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Pdss1Q33DR2 409 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Papd5Q68ED3 633 aaKnown RBP16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Got1l1Q7TSV6 404 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Cdkn3Q810P3 211 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Colgalt1Q8K297 617 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Q9D1Z2 194 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 ParvbQ9ES46 365 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Tnfrsf10bQ9QZM4 381 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Olfr271-ps1A0A1L1SQH2 283 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Gsta3P30115 221 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Tmem165P52875 323 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Mpzl3Q3V3F6 237 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 C6.1alQ7M757 291 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Cnot6Q8K3P5 557 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Lrrc71Q9D3W5 558 aa16.87■□□□□ 0.29
Shh-201ENSMUST00000002708 Crhr1P35347 415 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Nek10Q3UGM2 1111 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Zbtb16Q3UQ17 673 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Fbxo41Q6NS60 873 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Rbbp5Q8BX09 538 aaKnown RBP16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Brat1Q8C3R1 822 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Mrps5Q99N87 432 aaKnown RBP16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 PllpQ9DCU2 182 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Tmod3Q9JHJ0 352 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Noa1Q9JJG9 693 aaKnown RBP16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Col11a1Q61245 1804 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Ccdc175E9PVB3 822 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Zfp946F6VWU8 523 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Mfsd4b4J3QNS5 503 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Hcn2O88703 863 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Atoh1P48985 351 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 MipP51180 263 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 Mgat3Q10470 538 aa16.86■□□□□ 0.29
Shh-201ENSMUST00000002708 PrkciQ62074 595 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 22,080 RNA–protein pairs in 29.2 ms