Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm25239-201ENSMUST00000174915 86 ntBASIC46.33■■■■■ 5.01
Col11a1Q61245 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC43.26■■■■■ 4.52
Col11a1Q61245 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC42.23■■■■■ 4.35
Col11a1Q61245 Gm24109-201ENSMUST00000175489 103 ntBASIC40.54■■■■■ 4.08
Col11a1Q61245 Gm15042-201ENSMUST00000120212 883 ntBASIC40.02■■■■■ 4
Col11a1Q61245 Gm15045-201ENSMUST00000117359 883 ntBASIC39.28■■■■□ 3.88
Col11a1Q61245 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC39.22■■■■□ 3.87
Col11a1Q61245 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
Col11a1Q61245 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
Col11a1Q61245 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
Col11a1Q61245 Gm23366-201ENSMUST00000175022 89 ntBASIC38.54■■■■□ 3.76
Col11a1Q61245 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.94■■■■□ 3.66
Col11a1Q61245 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC37.49■■■■□ 3.59
Col11a1Q61245 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC37.44■■■■□ 3.58
Col11a1Q61245 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.37■■■■□ 3.57
Col11a1Q61245 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37.21■■■■□ 3.55
Col11a1Q61245 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.2■■■■□ 3.54
Col11a1Q61245 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
Col11a1Q61245 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
Col11a1Q61245 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.81■■■■□ 3.48
Col11a1Q61245 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
Col11a1Q61245 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.74■■■■□ 3.47
Col11a1Q61245 Gm25238-201ENSMUST00000174914 89 ntBASIC36.73■■■■□ 3.47
Col11a1Q61245 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
Col11a1Q61245 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.2■■■■□ 3.39
Col11a1Q61245 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC36■■■■□ 3.35
Col11a1Q61245 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.96■■■■□ 3.35
Col11a1Q61245 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
Col11a1Q61245 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.86■■■■□ 3.33
Col11a1Q61245 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.76■■■■□ 3.32
Col11a1Q61245 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Col11a1Q61245 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.67■■■■□ 3.3
Col11a1Q61245 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.6■■■■□ 3.29
Col11a1Q61245 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
Col11a1Q61245 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
Col11a1Q61245 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35.48■■■■□ 3.27
Col11a1Q61245 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35.43■■■■□ 3.26
Col11a1Q61245 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.35■■■■□ 3.25
Col11a1Q61245 Gm25262-201ENSMUST00000174934 133 ntBASIC35.27■■■■□ 3.24
Col11a1Q61245 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
Col11a1Q61245 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC35.05■■■■□ 3.2
Col11a1Q61245 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
Col11a1Q61245 Gm27325-201ENSMUST00000175467 74 ntBASIC34.96■■■■□ 3.19
Col11a1Q61245 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.88■■■■□ 3.17
Col11a1Q61245 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.88■■■■□ 3.17
Col11a1Q61245 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
Col11a1Q61245 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
Col11a1Q61245 Gm26115-201ENSMUST00000175605 87 ntBASIC34.68■■■■□ 3.14
Col11a1Q61245 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC34.66■■■■□ 3.14
Col11a1Q61245 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.62■■■■□ 3.13
Col11a1Q61245 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
Col11a1Q61245 Gm8109-201ENSMUST00000194076 746 ntBASIC34.6■■■■□ 3.13
Col11a1Q61245 Rab21-202ENSMUST00000218831 843 ntBASIC34.6■■■■□ 3.13
Col11a1Q61245 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34.52■■■■□ 3.12
Col11a1Q61245 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC34.51■■■■□ 3.11
Col11a1Q61245 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
Col11a1Q61245 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.41■■■■□ 3.1
Col11a1Q61245 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
Col11a1Q61245 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
Col11a1Q61245 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC34.31■■■■□ 3.08
Col11a1Q61245 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
Col11a1Q61245 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Col11a1Q61245 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.14■■■■□ 3.06
Col11a1Q61245 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
Col11a1Q61245 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34.04■■■■□ 3.04
Col11a1Q61245 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC34■■■■□ 3.03
Col11a1Q61245 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.9■■■■□ 3.02
Col11a1Q61245 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.8■■■■□ 3
Col11a1Q61245 Psd-208ENSMUST00000224556 2034 ntBASIC33.79■■■■□ 3
Col11a1Q61245 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.77■■■■□ 3
Col11a1Q61245 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.76■■■■□ 3
Col11a1Q61245 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC33.76■■■□□ 2.99
Col11a1Q61245 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Col11a1Q61245 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
Col11a1Q61245 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.64■■■□□ 2.98
Col11a1Q61245 Gm17082-201ENSMUST00000166043 1091 ntBASIC33.6■■■□□ 2.97
Col11a1Q61245 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
Col11a1Q61245 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Col11a1Q61245 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.54■■■□□ 2.96
Col11a1Q61245 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
Col11a1Q61245 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.45■■■□□ 2.95
Col11a1Q61245 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.38■■■□□ 2.93
Col11a1Q61245 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Col11a1Q61245 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC33.31■■■□□ 2.92
Col11a1Q61245 Gm24804-201ENSMUST00000174982 85 ntBASIC33.28■■■□□ 2.92
Col11a1Q61245 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC33.25■■■□□ 2.91
Col11a1Q61245 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.24■■■□□ 2.91
Col11a1Q61245 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC33.23■■■□□ 2.91
Col11a1Q61245 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC33.18■■■□□ 2.9
Col11a1Q61245 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC33.14■■■□□ 2.9
Col11a1Q61245 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC33.13■■■□□ 2.89
Col11a1Q61245 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
Col11a1Q61245 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Col11a1Q61245 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.08■■■□□ 2.89
Col11a1Q61245 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC33.06■■■□□ 2.88
Col11a1Q61245 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
Col11a1Q61245 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
Col11a1Q61245 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
Col11a1Q61245 Gm27322-201ENSMUST00000184007 104 ntBASIC32.98■■■□□ 2.87
Col11a1Q61245 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms