Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm25239-201ENSMUST00000174915 86 ntBASIC46,33■■■■■ 5,01
Col11a1Q61245 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC43,26■■■■■ 4,52
Col11a1Q61245 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC42,23■■■■■ 4,35
Col11a1Q61245 Gm24109-201ENSMUST00000175489 103 ntBASIC40,54■■■■■ 4,08
Col11a1Q61245 Gm15042-201ENSMUST00000120212 883 ntBASIC40,02■■■■■ 4
Col11a1Q61245 Gm15045-201ENSMUST00000117359 883 ntBASIC39,28■■■■□ 3,88
Col11a1Q61245 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC39,22■■■■□ 3,87
Col11a1Q61245 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3,83
Col11a1Q61245 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38,98■■■■□ 3,83
Col11a1Q61245 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC38,94■■■■□ 3,82
Col11a1Q61245 Gm23366-201ENSMUST00000175022 89 ntBASIC38,54■■■■□ 3,76
Col11a1Q61245 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37,94■■■■□ 3,66
Col11a1Q61245 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC37,49■■■■□ 3,59
Col11a1Q61245 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC37,44■■■■□ 3,58
Col11a1Q61245 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37,37■■■■□ 3,57
Col11a1Q61245 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37,21■■■■□ 3,55
Col11a1Q61245 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37,2■■■■□ 3,54
Col11a1Q61245 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3,51
Col11a1Q61245 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36,98■■■■□ 3,51
Col11a1Q61245 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36,81■■■■□ 3,48
Col11a1Q61245 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36,78■■■■□ 3,48
Col11a1Q61245 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36,74■■■■□ 3,47
Col11a1Q61245 Gm25238-201ENSMUST00000174914 89 ntBASIC36,73■■■■□ 3,47
Col11a1Q61245 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36,54■■■■□ 3,44
Col11a1Q61245 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36,2■■■■□ 3,39
Col11a1Q61245 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC36■■■■□ 3,35
Col11a1Q61245 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35,96■■■■□ 3,35
Col11a1Q61245 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35,95■■■■□ 3,35
Col11a1Q61245 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35,86■■■■□ 3,33
Col11a1Q61245 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35,76■■■■□ 3,32
Col11a1Q61245 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35,71■■■■□ 3,31
Col11a1Q61245 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35,67■■■■□ 3,3
Col11a1Q61245 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35,6■■■■□ 3,29
Col11a1Q61245 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35,59■■■■□ 3,29
Col11a1Q61245 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35,48■■■■□ 3,27
Col11a1Q61245 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35,48■■■■□ 3,27
Col11a1Q61245 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35,43■■■■□ 3,26
Col11a1Q61245 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35,35■■■■□ 3,25
Col11a1Q61245 Gm25262-201ENSMUST00000174934 133 ntBASIC35,27■■■■□ 3,24
Col11a1Q61245 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC35,09■■■■□ 3,21
Col11a1Q61245 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC35,05■■■■□ 3,2
Col11a1Q61245 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34,96■■■■□ 3,19
Col11a1Q61245 Gm27325-201ENSMUST00000175467 74 ntBASIC34,96■■■■□ 3,19
Col11a1Q61245 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34,88■■■■□ 3,17
Col11a1Q61245 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34,88■■■■□ 3,17
Col11a1Q61245 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34,75■■■■□ 3,15
Col11a1Q61245 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34,72■■■■□ 3,15
Col11a1Q61245 Gm26115-201ENSMUST00000175605 87 ntBASIC34,68■■■■□ 3,14
Col11a1Q61245 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC34,66■■■■□ 3,14
Col11a1Q61245 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34,62■■■■□ 3,13
Col11a1Q61245 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34,61■■■■□ 3,13
Col11a1Q61245 Gm8109-201ENSMUST00000194076 746 ntBASIC34,6■■■■□ 3,13
Col11a1Q61245 Rab21-202ENSMUST00000218831 843 ntBASIC34,6■■■■□ 3,13
Col11a1Q61245 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34,52■■■■□ 3,12
Col11a1Q61245 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC34,51■■■■□ 3,11
Col11a1Q61245 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34,5■■■■□ 3,11
Col11a1Q61245 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34,41■■■■□ 3,1
Col11a1Q61245 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC34,37■■■■□ 3,09
Col11a1Q61245 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34,36■■■■□ 3,09
Col11a1Q61245 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC34,31■■■■□ 3,08
Col11a1Q61245 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34,29■■■■□ 3,08
Col11a1Q61245 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34,24■■■■□ 3,07
Col11a1Q61245 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34,14■■■■□ 3,06
Col11a1Q61245 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC34,05■■■■□ 3,04
Col11a1Q61245 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34,04■■■■□ 3,04
Col11a1Q61245 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC34■■■■□ 3,03
Col11a1Q61245 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33,9■■■■□ 3,02
Col11a1Q61245 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33,8■■■■□ 3
Col11a1Q61245 Psd-208ENSMUST00000224556 2034 ntBASIC33,79■■■■□ 3
Col11a1Q61245 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33,77■■■■□ 3
Col11a1Q61245 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33,76■■■■□ 3
Col11a1Q61245 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC33,76■■■□□ 2,99
Col11a1Q61245 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33,72■■■□□ 2,99
Col11a1Q61245 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33,71■■■□□ 2,99
Col11a1Q61245 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33,64■■■□□ 2,98
Col11a1Q61245 Gm17082-201ENSMUST00000166043 1091 ntBASIC33,6■■■□□ 2,97
Col11a1Q61245 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33,54■■■□□ 2,96
Col11a1Q61245 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33,54■■■□□ 2,96
Col11a1Q61245 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33,54■■■□□ 2,96
Col11a1Q61245 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33,51■■■□□ 2,95
Col11a1Q61245 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33,45■■■□□ 2,95
Col11a1Q61245 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33,38■■■□□ 2,93
Col11a1Q61245 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC33,31■■■□□ 2,92
Col11a1Q61245 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC33,31■■■□□ 2,92
Col11a1Q61245 Gm24804-201ENSMUST00000174982 85 ntBASIC33,28■■■□□ 2,92
Col11a1Q61245 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC33,25■■■□□ 2,91
Col11a1Q61245 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33,24■■■□□ 2,91
Col11a1Q61245 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC33,23■■■□□ 2,91
Col11a1Q61245 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC33,18■■■□□ 2,9
Col11a1Q61245 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC33,14■■■□□ 2,9
Col11a1Q61245 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC33,13■■■□□ 2,89
Col11a1Q61245 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33,09■■■□□ 2,89
Col11a1Q61245 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC33,09■■■□□ 2,89
Col11a1Q61245 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33,08■■■□□ 2,89
Col11a1Q61245 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC33,06■■■□□ 2,88
Col11a1Q61245 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33,05■■■□□ 2,88
Col11a1Q61245 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2,87
Col11a1Q61245 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC32,99■■■□□ 2,87
Col11a1Q61245 Gm27322-201ENSMUST00000184007 104 ntBASIC32,98■■■□□ 2,87
Col11a1Q61245 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC32,95■■■□□ 2,86
Retrieved 100 of 76,532 protein–RNA pairs in 19,9 ms