RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 HP1BP3Q5SSJ5 553 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 RNF43Q68DV7 783 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 ARHGAP17Q68EM7 881 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 SPECC1LQ69YQ0 1117 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 ANKRD54Q6NXT1 300 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 VSTM1Q6UX27 236 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TMEM184AQ6ZMB5 413 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 EP400NLQ6ZTU2 488 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 RTL10Q7L3V2 364 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 VSTM4Q8IW00 320 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TRIM42Q8IWZ5 723 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 FAM71AQ8IYT1 594 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 SMRP1Q8NCR6 262 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 CMASQ8NFW8 434 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 HDAC7Q8WUI4 952 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 PPM1EQ8WY54 764 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TFAP2BQ92481 460 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 IQCDQ96DY2 449 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 MRFAP1L1Q96HT8 127 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 HEXIM2Q96MH2 286 aaKnown RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 HNRNPABQ99729 332 aaKnown RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TRIM56Q9BRZ2 755 aaKnown RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 MED10Q9BTT4 135 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 B3GNT5Q9BYG0 378 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 UBE2ZQ9H832 354 aaPredicted RBP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 ZFP64Q9NPA5 681 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TMEM30AQ9NV96 361 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 ZDHHC7Q9NXF8 308 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 CLEC1BQ9P126 229 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 TSPAN16Q9UKR8 245 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 MYO6Q9UM54 1294 aa6.69□□□□□ -1.34
PRKDC-211ENST00000546304 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.69□□□□□ -1.34
PRKDC-211ENST00000546304 A0A1W2PQJ5 194 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 LRRC53A6NM62 1247 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 H3BQ06 376 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 FOXN3O00409 490 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CCL16O15467 120 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 THAP12O43422 761 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 GFPT2O94808 682 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 PAPLNO95428 1278 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CALCAP01258 141 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 HNRNPA1P09651 372 aaKnown RBP eCLIP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 SETSIPP0DME0 302 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 HAPLN1P10915 354 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 VDRP11473 427 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CYP11B1P15538 503 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ANXA13P27216 316 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 MAOBP27338 520 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 LTBRP36941 435 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 STAT1P42224 750 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ALDH1A3P47895 512 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 TUFMP49411 452 aaKnown RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 GPR15P49685 360 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 EPHB3P54753 998 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 BPIFB4P59827 614 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 RPL10AP62906 217 aaKnown RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CLUL1Q15846 466 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 MEA1Q16626 185 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 RARS2Q5T160 578 aaKnown RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 E4F1Q66K89 784 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 SYCE2Q6PIF2 218 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 TMC5Q6UXY8 1006 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CLEC20AQ6ZU45 233 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 BEND4Q6ZU67 534 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 PAQR9Q6ZVX9 377 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 SLC47A2Q86VL8 602 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 TTC30AQ86WT1 665 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 FMNL3Q8IVF7 1028 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 SCN4BQ8IWT1 228 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 C12orf76Q8N812 135 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 C12orf50Q8NA57 414 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 STKLD1Q8NE28 680 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 SMG7Q92540 1137 aaKnown RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ZNF707Q96C28 371 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CYFIP2Q96F07 1278 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 MSLNLQ96KJ4 702 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ASB16Q96NS5 453 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ZSWIM1Q9BR11 485 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 NUP58Q9BVL2 599 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 APOL5Q9BWW9 433 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 EDEM3Q9BZQ6 932 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 PNPLA8Q9NP80 782 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 ACP6Q9NPH0 428 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 HESX1Q9UBX0 185 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 CD207Q9UJ71 328 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 KIAA1257Q9ULG3 409 aa6.68□□□□□ -1.34
PRKDC-211ENST00000546304 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 KIF26AQ9ULI4 1882 aaPredicted RBP6.68□□□□□ -1.34
PRKDC-211ENST00000546304 HMX2A2RU54 273 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 GOLGA6L3A6NEY3 463 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 MED7O43513 233 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 MFAP3LO75121 409 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 TPM1P09493 284 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 CCDC172P0C7W6 258 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 FERP16591 822 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 GRIK1P39086 918 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 SLC5A3P53794 718 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 MAP3K7CLP57077 242 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 SLC8A3P57103 927 aa6.67□□□□□ -1.34
PRKDC-211ENST00000546304 ARID5AQ03989 594 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms