RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 AEBP2Q6ZN18 517 aaPredicted RBP22.34■■□□□ 1.17
PRKDC-211ENST00000546304 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
PRKDC-211ENST00000546304 SENP3Q9H4L4 574 aaPredicted RBP19.03■□□□□ 0.64
PRKDC-211ENST00000546304 PHF23Q9BUL5 403 aaPredicted RBP18.97■□□□□ 0.63
PRKDC-211ENST00000546304 FOXD1Q16676 465 aa17.66■□□□□ 0.42
PRKDC-211ENST00000546304 PLPPR3Q6T4P5 718 aa17.46■□□□□ 0.39
PRKDC-211ENST00000546304 PPP6R1Q9UPN7 881 aa16.8■□□□□ 0.28
PRKDC-211ENST00000546304 ADRA2BP18089 450 aa16.76■□□□□ 0.27
PRKDC-211ENST00000546304 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
PRKDC-211ENST00000546304 MSH5O43196 834 aa16.41■□□□□ 0.22
PRKDC-211ENST00000546304 SCAF1Q9H7N4 1312 aaKnown RBP15.39■□□□□ 0.05
PRKDC-211ENST00000546304 PPP4R3CPQ6ZMV5 832 aa15.33■□□□□ 0.04
PRKDC-211ENST00000546304 POTEDQ86YR6 584 aa15.31■□□□□ 0.04
PRKDC-211ENST00000546304 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
PRKDC-211ENST00000546304 NISCHQ9Y2I1 1504 aa15.17■□□□□ 0.02
PRKDC-211ENST00000546304 DMRT2Q9Y5R5 561 aa15.16■□□□□ 0.02
PRKDC-211ENST00000546304 CNKSR2Q8WXI2 1034 aa14.97□□□□□ -0.01
PRKDC-211ENST00000546304 NCBP3Q53F19 620 aaKnown RBP14.89□□□□□ -0.03
PRKDC-211ENST00000546304 HOXD11P31277 338 aaPredicted RBP14.76□□□□□ -0.05
PRKDC-211ENST00000546304 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
PRKDC-211ENST00000546304 KCNA4P22459 653 aa14.7□□□□□ -0.06
PRKDC-211ENST00000546304 NPM3O75607 178 aaKnown RBP14.65□□□□□ -0.06
PRKDC-211ENST00000546304 DCAF8L1A6NGE4 600 aa14.42□□□□□ -0.1
PRKDC-211ENST00000546304 DNAJC5BQ9UF47 199 aa14.37□□□□□ -0.11
PRKDC-211ENST00000546304 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
PRKDC-211ENST00000546304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.01□□□□□ -0.177e-7■□□□□ 9.1
PRKDC-211ENST00000546304 SLC4A1APQ9BWU0 796 aaKnown RBP13.96□□□□□ -0.17
PRKDC-211ENST00000546304 SLC4A2P04920 1241 aa13.9□□□□□ -0.18
PRKDC-211ENST00000546304 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
PRKDC-211ENST00000546304 CACNB1Q02641 598 aaPredicted RBP13.79□□□□□ -0.2
PRKDC-211ENST00000546304 U3KPZ7 1027 aaPredicted RBP13.79□□□□□ -0.2
PRKDC-211ENST00000546304 FOXD4L1Q9NU39 408 aa13.62□□□□□ -0.23
PRKDC-211ENST00000546304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
PRKDC-211ENST00000546304 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
PRKDC-211ENST00000546304 MYCNP04198 464 aaPredicted RBP13.55□□□□□ -0.24
PRKDC-211ENST00000546304 ZBTB22O15209 634 aa13.53□□□□□ -0.24
PRKDC-211ENST00000546304 CCDC180Q9P1Z9 1646 aa13.51□□□□□ -0.25
PRKDC-211ENST00000546304 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
PRKDC-211ENST00000546304 APLP2Q06481 763 aa13.48□□□□□ -0.25
PRKDC-211ENST00000546304 SPINK5Q9NQ38 1064 aaPredicted RBP13.44□□□□□ -0.26
PRKDC-211ENST00000546304 CAPN15O75808 1086 aa13.39□□□□□ -0.27
PRKDC-211ENST00000546304 ZNF219Q9P2Y4 722 aaPredicted RBP13.31□□□□□ -0.28
PRKDC-211ENST00000546304 CSRNP3Q8WYN3 585 aa13.27□□□□□ -0.29
PRKDC-211ENST00000546304 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
PRKDC-211ENST00000546304 DSG3P32926 999 aa13.26□□□□□ -0.29
PRKDC-211ENST00000546304 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
PRKDC-211ENST00000546304 ATXN8OSP0DMR3 200 aa13.21□□□□□ -0.29
PRKDC-211ENST00000546304 ATF5Q9Y2D1 282 aaPredicted RBP13.17□□□□□ -0.3
PRKDC-211ENST00000546304 ABCB7O75027 752 aa13.09□□□□□ -0.31
PRKDC-211ENST00000546304 POLA2Q14181 598 aa13.02□□□□□ -0.33
PRKDC-211ENST00000546304 ABCC9O60706 1549 aa12.95□□□□□ -0.34
PRKDC-211ENST00000546304 ZBTB12Q9Y330 459 aaPredicted RBP12.84□□□□□ -0.35
PRKDC-211ENST00000546304 ZCCHC6Q5VYS8 1495 aaKnown RBP12.72□□□□□ -0.37
PRKDC-211ENST00000546304 FBLN2P98095 1184 aa12.66□□□□□ -0.38
PRKDC-211ENST00000546304 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
PRKDC-211ENST00000546304 MKRN4PQ13434 485 aaPredicted RBP12.61□□□□□ -0.39
PRKDC-211ENST00000546304 NACADO15069 1562 aa12.6□□□□□ -0.39
PRKDC-211ENST00000546304 DCAF1Q9Y4B6 1507 aa12.59□□□□□ -0.39
PRKDC-211ENST00000546304 OSCARQ8IYS5 282 aa12.58□□□□□ -0.4
PRKDC-211ENST00000546304 RB1CC1Q8TDY2 1594 aa12.58□□□□□ -0.4
PRKDC-211ENST00000546304 MYO15BQ96JP2 1530 aa12.57□□□□□ -0.4
PRKDC-211ENST00000546304 SPDYE2BA6NHP3 402 aa12.46□□□□□ -0.41
PRKDC-211ENST00000546304 DCAF8L2P0C7V8 631 aa12.46□□□□□ -0.41
PRKDC-211ENST00000546304 SPDYE6P0CI01 402 aa12.46□□□□□ -0.41
PRKDC-211ENST00000546304 SPDYE2Q495Y8 402 aa12.46□□□□□ -0.41
PRKDC-211ENST00000546304 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
PRKDC-211ENST00000546304 UNC13AQ9UPW8 1703 aa12.37□□□□□ -0.43
PRKDC-211ENST00000546304 SSUH2Q9Y2M2 353 aa12.35□□□□□ -0.43
PRKDC-211ENST00000546304 ZNF692Q9BU19 519 aaPredicted RBP12.34□□□□□ -0.43
PRKDC-211ENST00000546304 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
PRKDC-211ENST00000546304 SCRIBQ14160 1630 aa12.31□□□□□ -0.44
PRKDC-211ENST00000546304 SPDYE4A6NLX3 237 aa12.21□□□□□ -0.45
PRKDC-211ENST00000546304 CHRDL2Q6WN34 429 aa12.21□□□□□ -0.45
PRKDC-211ENST00000546304 BICRAQ9NZM4 1560 aa12.19□□□□□ -0.46
PRKDC-211ENST00000546304 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
PRKDC-211ENST00000546304 PABPN1Q86U42 306 aaKnown RBP eCLIP12.17□□□□□ -0.46
PRKDC-211ENST00000546304 SPDYE1Q8NFV5 336 aaPredicted RBP12.14□□□□□ -0.47
PRKDC-211ENST00000546304 SHROOM4Q9ULL8 1493 aa12.11□□□□□ -0.47
PRKDC-211ENST00000546304 POTEHQ6S545 545 aa12.07□□□□□ -0.48
PRKDC-211ENST00000546304 PROM2Q8N271 834 aa12.04□□□□□ -0.48
PRKDC-211ENST00000546304 CLEC11AQ9Y240 323 aa12.03□□□□□ -0.48
PRKDC-211ENST00000546304 FXR2P51116 673 aaKnown RBP eCLIP12.01□□□□□ -0.494e-13■■■■■ 38.8
PRKDC-211ENST00000546304 PIP4P2Q8N4L2 257 aa11.99□□□□□ -0.49
PRKDC-211ENST00000546304 FKBP8Q14318 412 aa11.98□□□□□ -0.49
PRKDC-211ENST00000546304 STAG3Q9UJ98 1225 aa11.96□□□□□ -0.49
PRKDC-211ENST00000546304 PRR29P0C7W0 189 aa11.93□□□□□ -0.5
PRKDC-211ENST00000546304 EIF4G1Q04637 1599 aaKnown RBP11.87□□□□□ -0.51
PRKDC-211ENST00000546304 PRKAR2AP13861 404 aaKnown RBP11.84□□□□□ -0.51
PRKDC-211ENST00000546304 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
PRKDC-211ENST00000546304 BAZ1AQ9NRL2 1556 aaPredicted RBP11.78□□□□□ -0.52
PRKDC-211ENST00000546304 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.52
PRKDC-211ENST00000546304 CC2D2AQ9P2K1 1620 aa11.76□□□□□ -0.53
PRKDC-211ENST00000546304 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
PRKDC-211ENST00000546304 CREBZFQ9NS37 354 aa11.74□□□□□ -0.53
PRKDC-211ENST00000546304 FARP1Q9Y4F1 1045 aaPredicted RBP11.69□□□□□ -0.54
PRKDC-211ENST00000546304 MROH2BQ7Z745 1585 aa11.69□□□□□ -0.54
PRKDC-211ENST00000546304 FBXO3Q9UK99 471 aa11.67□□□□□ -0.54
PRKDC-211ENST00000546304 PEG3Q9GZU2 1588 aa11.67□□□□□ -0.54
PRKDC-211ENST00000546304 SMARCA2P51531 1590 aa11.66□□□□□ -0.54
PRKDC-211ENST00000546304 HAX1O00165 279 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms