RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RBMS2Q15434 407 aaKnown RBP4.67□□□□□ -1.66
CD44-217ENST00000525348 MAPKAPK3Q16644 382 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 PFKFB3Q16875 520 aaPredicted RBP4.67□□□□□ -1.66
CD44-217ENST00000525348 TRIM71Q2Q1W2 868 aaKnown RBP4.67□□□□□ -1.66
CD44-217ENST00000525348 HSP90AB2PQ58FF8 381 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 C10orf25Q5T742 122 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 IZUMO3Q5VZ72 239 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 CCDC144NLQ6NUI1 221 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 SHC4Q6S5L8 630 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 KYAT3Q6YP21 454 aaKnown RBP4.67□□□□□ -1.66
CD44-217ENST00000525348 PIGOQ8TEQ8 1089 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 GRAMD1AQ96CP6 724 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 RXFP3Q9NSD7 469 aa4.67□□□□□ -1.66
CD44-217ENST00000525348 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 C2CD4BA6NLJ0 364 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 PODXLO00592 558 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 PCDH17O14917 1159 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 INPPL1O15357 1258 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CTIFO43310 598 aaKnown RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 TLR2O60603 784 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CNOT3O75175 753 aaKnown RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 PLAUP00749 431 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CTSAP10619 480 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 DUSP1P28562 367 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 HOXA7P31268 230 aaPredicted RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 VPS41P49754 854 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 AK2P54819 239 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 NSUN2Q08J23 767 aaKnown RBP eCLIP4.66□□□□□ -1.66
CD44-217ENST00000525348 SEMA3BQ13214 749 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 ELF2Q15723 593 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CNGA3Q16281 694 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 PXDC1Q5TGL8 231 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 MSANTD2Q6P1R3 559 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 TLDC1Q6P9B6 456 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 C16orf89Q6UX73 402 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 DEF8Q6ZN54 512 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 KRT73Q86Y46 540 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 AKAP1Q92667 903 aaKnown RBP eCLIP4.66□□□□□ -1.66
CD44-217ENST00000525348 ZNF566Q969W8 418 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 P2RY11Q96G91 374 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CCDC138Q96M89 665 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 FCRL5Q96RD9 977 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 TMEM79Q9BSE2 394 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 CHST12Q9NRB3 414 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 ARL8BQ9NVJ2 186 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 ASNSD1Q9NWL6 643 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 MAFFQ9ULX9 164 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 DTNAQ9Y4J8 743 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 HEMK1Q9Y5R4 338 aaPredicted RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 SIRT4Q9Y6E7 314 aaPredicted RBP4.66□□□□□ -1.66
CD44-217ENST00000525348 ABCC9O60706 1549 aa4.66□□□□□ -1.66
CD44-217ENST00000525348 LY6G6EA0A0G2JKS1 128 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 SLC22A23A1A5C7 686 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 J3KTA2 159 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 TAF5LO75529 589 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 VIPP01282 170 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 FGBP02675 491 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 KRT18P05783 430 aaKnown RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 IGKV2-30P06310 120 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 NBPF7P0C2Y1 421 aaPredicted RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 IDEP14735 1019 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ST6GAL1P15907 406 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ZNF84P51523 738 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ID2Q02363 134 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 SRSF1Q07955 248 aaKnown RBP eCLIP4.65□□□□□ -1.67
CD44-217ENST00000525348 RAB30Q15771 203 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 EPHA10Q5JZY3 1008 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 LCE1AQ5T7P2 110 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ANO7Q6IWH7 933 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ACSM6Q6P461 480 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 C11orf96Q7Z7L8 435 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 RFX6Q8HWS3 928 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 C16orf71Q8IYS4 520 aaPredicted RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 ZNF366Q8N895 744 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 IPO4Q8TEX9 1081 aaKnown RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 CUL5Q93034 780 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 ZBTB9Q96C00 473 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 MCRS1Q96EZ8 462 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 TRMT61AQ96FX7 289 aaKnown RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 SGCZQ96LD1 299 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 SCNM1Q9BWG6 230 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 EIF2AQ9BY44 585 aaKnown RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 RNF26Q9BY78 433 aaPredicted RBP4.65□□□□□ -1.67
CD44-217ENST00000525348 KRTAP9-8Q9BYQ0 159 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 CDCP1Q9H5V8 836 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 CERS4Q9HA82 394 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 IGSF9Q9P2J2 1179 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 HEY2Q9UBP5 337 aa4.65□□□□□ -1.67
CD44-217ENST00000525348 GXYLT2A0PJZ3 443 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 PLA2G6O60733 806 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 MYL1P05976 194 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 ITGA5P08648 1049 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 SRGAP2BP0DMP2 458 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 ABCB4P21439 1286 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 HOXD12P35452 270 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 STAT6P42226 847 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 GSTM5P46439 218 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 SOX2P48431 317 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 AGTR2P50052 363 aa4.64□□□□□ -1.67
CD44-217ENST00000525348 RPS13P62277 151 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms