RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 AEBP2Q6ZN18 517 aaPredicted RBP24.43■■□□□ 1.5
CD44-217ENST00000525348 CHIC1Q5VXU3 224 aa23.64■■□□□ 1.37
CD44-217ENST00000525348 PHF23Q9BUL5 403 aaPredicted RBP20.85■□□□□ 0.93
CD44-217ENST00000525348 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
CD44-217ENST00000525348 FOXD1Q16676 465 aa19.23■□□□□ 0.67
CD44-217ENST00000525348 PLPPR3Q6T4P5 718 aa19.08■□□□□ 0.64
CD44-217ENST00000525348 PPP6R1Q9UPN7 881 aa18.44■□□□□ 0.54
CD44-217ENST00000525348 ADRA2BP18089 450 aa18.39■□□□□ 0.53
CD44-217ENST00000525348 PIAS4Q8N2W9 510 aaPredicted RBP18.06■□□□□ 0.48
CD44-217ENST00000525348 MSH5O43196 834 aa17.68■□□□□ 0.42
CD44-217ENST00000525348 PPP4R3CPQ6ZMV5 832 aa16.84■□□□□ 0.29
CD44-217ENST00000525348 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
CD44-217ENST00000525348 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
CD44-217ENST00000525348 DMRT2Q9Y5R5 561 aa16.47■□□□□ 0.23
CD44-217ENST00000525348 POTEDQ86YR6 584 aa16.44■□□□□ 0.22
CD44-217ENST00000525348 CNKSR2Q8WXI2 1034 aa16.36■□□□□ 0.21
CD44-217ENST00000525348 KCNA4P22459 653 aa16.33■□□□□ 0.2
CD44-217ENST00000525348 NCBP3Q53F19 620 aaKnown RBP16.26■□□□□ 0.19
CD44-217ENST00000525348 NPM3O75607 178 aaKnown RBP16.13■□□□□ 0.17
CD44-217ENST00000525348 HOXD11P31277 338 aaPredicted RBP16.08■□□□□ 0.16
CD44-217ENST00000525348 RNF216Q9NWF9 866 aaPredicted RBP16.08■□□□□ 0.16
CD44-217ENST00000525348 DCAF8L1A6NGE4 600 aa15.73■□□□□ 0.11
CD44-217ENST00000525348 DNAJC5BQ9UF47 199 aa15.65■□□□□ 0.1
CD44-217ENST00000525348 SLC4A1APQ9BWU0 796 aaKnown RBP15.47■□□□□ 0.07
CD44-217ENST00000525348 SLC4A2P04920 1241 aa15.31■□□□□ 0.04
CD44-217ENST00000525348 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.27■□□□□ 0.04
CD44-217ENST00000525348 RNF39Q9H2S5 420 aa15.21■□□□□ 0.03
CD44-217ENST00000525348 U3KPZ7 1027 aaPredicted RBP15.1■□□□□ 0.01
CD44-217ENST00000525348 ZBTB22O15209 634 aa15.08■□□□□ 0
CD44-217ENST00000525348 FOXD4L1Q9NU39 408 aa15.01□□□□□ -0.01
CD44-217ENST00000525348 C1QBPQ07021 282 aaKnown RBP14.96□□□□□ -0.01
CD44-217ENST00000525348 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
CD44-217ENST00000525348 CACNB1Q02641 598 aaPredicted RBP14.87□□□□□ -0.03
CD44-217ENST00000525348 MYCNP04198 464 aaPredicted RBP14.86□□□□□ -0.03
CD44-217ENST00000525348 CSRNP3Q8WYN3 585 aa14.83□□□□□ -0.04
CD44-217ENST00000525348 SPINK5Q9NQ38 1064 aaPredicted RBP14.73□□□□□ -0.05
CD44-217ENST00000525348 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.71□□□□□ -0.05
CD44-217ENST00000525348 HNRNPUL2Q1KMD3 747 aaKnown RBP14.71□□□□□ -0.05
CD44-217ENST00000525348 SAMD1Q6SPF0 538 aaPredicted RBP14.69□□□□□ -0.06
CD44-217ENST00000525348 CAPN15O75808 1086 aa14.59□□□□□ -0.07
CD44-217ENST00000525348 ATF5Q9Y2D1 282 aaPredicted RBP14.58□□□□□ -0.08
CD44-217ENST00000525348 APLP2Q06481 763 aa14.56□□□□□ -0.08
CD44-217ENST00000525348 TRHP20396 242 aaPredicted RBP14.51□□□□□ -0.09
CD44-217ENST00000525348 ATXN8OSP0DMR3 200 aa14.46□□□□□ -0.09
CD44-217ENST00000525348 ZNF219Q9P2Y4 722 aaPredicted RBP14.45□□□□□ -0.1
CD44-217ENST00000525348 DSG3P32926 999 aa14.43□□□□□ -0.1
CD44-217ENST00000525348 ABCB7O75027 752 aa14.36□□□□□ -0.11
CD44-217ENST00000525348 POLA2Q14181 598 aa14.24□□□□□ -0.13
CD44-217ENST00000525348 MKRN4PQ13434 485 aaPredicted RBP13.93□□□□□ -0.18
CD44-217ENST00000525348 ZBTB12Q9Y330 459 aaPredicted RBP13.91□□□□□ -0.18
CD44-217ENST00000525348 FBLN2P98095 1184 aa13.82□□□□□ -0.2
CD44-217ENST00000525348 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
CD44-217ENST00000525348 RBM42Q9BTD8 480 aaKnown RBP13.66□□□□□ -0.22
CD44-217ENST00000525348 SPDYE2BA6NHP3 402 aa13.58□□□□□ -0.24
CD44-217ENST00000525348 SPDYE6P0CI01 402 aa13.58□□□□□ -0.24
CD44-217ENST00000525348 SPDYE2Q495Y8 402 aa13.58□□□□□ -0.24
CD44-217ENST00000525348 SSUH2Q9Y2M2 353 aa13.52□□□□□ -0.25
CD44-217ENST00000525348 ZNF692Q9BU19 519 aaPredicted RBP13.51□□□□□ -0.25
CD44-217ENST00000525348 AKT1S1Q96B36 256 aa13.5□□□□□ -0.25
CD44-217ENST00000525348 SPDYE4A6NLX3 237 aa13.47□□□□□ -0.25
CD44-217ENST00000525348 REM2Q8IYK8 340 aaPredicted RBP13.41□□□□□ -0.26
CD44-217ENST00000525348 FKBP8Q14318 412 aa13.37□□□□□ -0.27
CD44-217ENST00000525348 PABPN1Q86U42 306 aaKnown RBP eCLIP13.36□□□□□ -0.27
CD44-217ENST00000525348 PITPNM1O00562 1244 aa13.28□□□□□ -0.28
CD44-217ENST00000525348 PROM2Q8N271 834 aa13.28□□□□□ -0.28
CD44-217ENST00000525348 CHRDL2Q6WN34 429 aa13.21□□□□□ -0.29
CD44-217ENST00000525348 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
CD44-217ENST00000525348 CLEC11AQ9Y240 323 aa13.17□□□□□ -0.3
CD44-217ENST00000525348 PIP4P2Q8N4L2 257 aa13.05□□□□□ -0.32
CD44-217ENST00000525348 FXR2P51116 673 aaKnown RBP eCLIP13.04□□□□□ -0.32
CD44-217ENST00000525348 STAG3Q9UJ98 1225 aa13.02□□□□□ -0.33
CD44-217ENST00000525348 PRR29P0C7W0 189 aa13.01□□□□□ -0.33
CD44-217ENST00000525348 POTEHQ6S545 545 aa12.96□□□□□ -0.33
CD44-217ENST00000525348 CHADLQ6NUI6 762 aa12.93□□□□□ -0.34
CD44-217ENST00000525348 PRKAR2AP13861 404 aaKnown RBP12.91□□□□□ -0.34
CD44-217ENST00000525348 CREBZFQ9NS37 354 aa12.9□□□□□ -0.34
CD44-217ENST00000525348 FBXO3Q9UK99 471 aa12.83□□□□□ -0.36
CD44-217ENST00000525348 MNX1P50219 401 aaPredicted RBP12.76□□□□□ -0.37
CD44-217ENST00000525348 VASPP50552 380 aaPredicted RBP12.76□□□□□ -0.37
CD44-217ENST00000525348 MIER1Q8N108 512 aa12.75□□□□□ -0.37
CD44-217ENST00000525348 FARP1Q9Y4F1 1045 aaPredicted RBP12.75□□□□□ -0.37
CD44-217ENST00000525348 PLCD3Q8N3E9 789 aa12.71□□□□□ -0.37
CD44-217ENST00000525348 C19orf67A6NJJ6 358 aa12.61□□□□□ -0.39
CD44-217ENST00000525348 EVX2Q03828 476 aa12.61□□□□□ -0.39
CD44-217ENST00000525348 HAX1O00165 279 aa12.6□□□□□ -0.39
CD44-217ENST00000525348 PLEKHG5O94827 1062 aa12.6□□□□□ -0.39
CD44-217ENST00000525348 IFNLR1Q8IU57 520 aaPredicted RBP12.6□□□□□ -0.39
CD44-217ENST00000525348 NPM1P06748 294 aaKnown RBP eCLIP12.57□□□□□ -0.4
CD44-217ENST00000525348 CD44P16070 742 aaKnown RBP12.53□□□□□ -0.4
CD44-217ENST00000525348 NUBP1P53384 320 aa12.52□□□□□ -0.41
CD44-217ENST00000525348 ZBTB47Q9UFB7 747 aaPredicted RBP12.52□□□□□ -0.41
CD44-217ENST00000525348 KLHL34Q8N239 644 aa12.51□□□□□ -0.41
CD44-217ENST00000525348 RASEFQ8IZ41 740 aa12.5□□□□□ -0.41
CD44-217ENST00000525348 TSPYL2Q9H2G4 693 aaPredicted RBP12.43□□□□□ -0.42
CD44-217ENST00000525348 ZRANB1Q9UGI0 708 aa12.43□□□□□ -0.42
CD44-217ENST00000525348 SPOCK2Q92563 424 aa12.42□□□□□ -0.42
CD44-217ENST00000525348 SP7Q8TDD2 431 aaPredicted RBP12.4□□□□□ -0.42
CD44-217ENST00000525348 ZNF579Q8NAF0 562 aaKnown RBP12.37□□□□□ -0.43
CD44-217ENST00000525348 PHF12Q96QT6 1004 aa12.37□□□□□ -0.43
CD44-217ENST00000525348 CCDC61Q9Y6R9 512 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms