RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 RAB23Q9ULC3 237 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 SLC8A2Q9UPR5 921 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 THADAQ6YHU6 1953 aa12.68□□□□□ -0.38
USP40-210ENST00000454354 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.67□□□□□ -0.38
USP40-210ENST00000454354 LRP3O75074 770 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GNA14O95837 355 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 IRF1P10914 325 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 RARGP13631 454 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 BCAT1P54687 386 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GAD2Q05329 585 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GOLGA8FQ08AF8 430 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GOLGA8DPQ0D2H9 430 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 MESP2Q0VG99 397 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 CETN1Q12798 172 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 SIM2Q14190 667 aaPredicted RBP12.67□□□□□ -0.38
USP40-210ENST00000454354 DMC1Q14565 340 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 SGO2Q562F6 1265 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 HEATR6Q6AI08 1181 aaKnown RBP12.67□□□□□ -0.38
USP40-210ENST00000454354 TADA2BQ86TJ2 420 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 PIGZQ86VD9 579 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GAB3Q8WWW8 586 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 NT5C1BQ96P26 610 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 CDK5RAP1Q96SZ6 601 aaKnown RBP12.67□□□□□ -0.38
USP40-210ENST00000454354 PNKPQ96T60 521 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 SPHK2Q9NRA0 654 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 MARK1Q9P0L2 795 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 DNMT3LQ9UJW3 386 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 NAGPAQ9UK23 515 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 GMEB2Q9UKD1 530 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 TSPAN16Q9UKR8 245 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 KIAA1257Q9ULG3 409 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 LAMA1P25391 3075 aa12.67□□□□□ -0.38
USP40-210ENST00000454354 O00370 1275 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 XPO1O14980 1071 aaKnown RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 KAT7O95251 611 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 APODP05090 189 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 RETP07949 1114 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 PAEPP09466 180 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 VDRP11473 427 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 TGM1P22735 817 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 GRIA2P42262 883 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 PLA2G4AP47712 749 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 SLC6A11P48066 632 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 STX17P56962 302 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 SLC8A3P57103 927 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 MRPS21P82921 87 aaKnown RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 GCNT1Q02742 428 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 BST2Q10589 180 aaKnown RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 SRSF5Q13243 272 aaKnown RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 GOLGA7BQ2TAP0 167 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 C10orf120Q5SQS8 335 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 PM20D1Q6GTS8 502 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 Q6ZNB5 142 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 PRR23BQ6ZRT6 265 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 ABCA7Q8IZY2 2146 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 ARHGAP18Q8N392 663 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 POLR3BQ9NW08 1133 aaPredicted RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 EBF1Q9UH73 591 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 LSM7Q9UK45 103 aaKnown RBP12.66□□□□□ -0.38
USP40-210ENST00000454354 MMP17Q9ULZ9 603 aa12.66□□□□□ -0.38
USP40-210ENST00000454354 TULP2O00295 520 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 MDM4O15151 490 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 TULP3O75386 442 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 STC2O76061 302 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 APBB3O95704 486 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 AFPP02771 609 aaKnown RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 SETSIPP0DME0 302 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 RALAP11233 206 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 CD19P15391 556 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 TNFRSF4P43489 277 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 KIR2DL1P43626 348 aaPredicted RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 ID4P47928 161 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 PXNP49023 591 aaPredicted RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 TKTL1P51854 596 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 SEC13P55735 322 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 KDSRQ06136 332 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 PDE4CQ08493 712 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 KCNH2Q12809 1159 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 LRMPQ12912 555 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 LPAL2Q16609 132 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 HSF5Q4G112 596 aaPredicted RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 PREPLQ4J6C6 727 aaPredicted RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 PKDCCQ504Y2 493 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 TMEM270Q6UE05 265 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 LCLAT1Q6UWP7 414 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 BHLHA9Q7RTU4 235 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 TMEM25Q86YD3 366 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 SCML4Q8N228 414 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 PPM1KQ8N3J5 372 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 KCTD13Q8WZ19 329 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 HHIPQ96QV1 700 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 SRRTQ9BXP5 876 aaKnown RBP12.65□□□□□ -0.38
USP40-210ENST00000454354 PARD6AQ9NPB6 346 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 ARHGEF4Q9NR80 690 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 HESX1Q9UBX0 185 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 RWDD2AQ9UIY3 292 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 NUDT5Q9UKK9 219 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 CKAP5Q14008 2032 aa12.65□□□□□ -0.38
USP40-210ENST00000454354 ANTXRLA6NF34 631 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms