RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CFAP99D6REC4 459 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 NCAM1P13591 858 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 PSMB9P28065 219 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 MGAT5Q09328 741 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CCDC153Q494R4 210 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 IER5Q5VY09 327 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 BNIPLQ7Z465 357 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 BTN2A2Q8WVV5 523 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CKAP2Q8WWK9 683 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 SRPK1Q96SB4 655 aaKnown RBP17.87■□□□□ 0.45
SYNPO-201ENST00000307662 CBWD1Q9BRT8 395 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 PARVBQ9HBI1 364 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 PCDHB8Q9UN66 801 aa17.87■□□□□ 0.45
SYNPO-201ENST00000307662 TRAF2Q12933 501 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 MTMR2Q13614 643 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 COG2Q14746 738 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 SLC45A4Q5BKX6 768 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 PRMT9Q6P2P2 845 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 TMC2Q8TDI7 906 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 NRDE2Q9H7Z3 1164 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 UNC5CO95185 931 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 LSM8O95777 96 aaKnown RBP17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ITGB3P05106 788 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 RARAP10276 462 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 PRIM2P49643 509 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 DMPKQ09013 629 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 PRKAA1Q13131 559 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 SWT1Q5T5J6 900 aaKnown RBP17.86■□□□□ 0.45
SYNPO-201ENST00000307662 TLK2Q86UE8 772 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 TEX13BQ9BXU2 312 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 VTI1BQ9UEU0 232 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 USP18Q9UMW8 372 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 PCDHA3Q9Y5H8 950 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 MAGEB2O15479 319 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 IL5RAQ01344 420 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ITPK1Q13572 414 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 VPS72Q15906 364 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ARMC4Q5T2S8 1044 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 SALL3Q9BXA9 1300 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 A0A087WXM4 84 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 TSC22D2O75157 780 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 SERPIND1P05546 499 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ME2P23368 584 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ELK3P41970 407 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 PPP4CP60510 307 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 MPP3Q13368 585 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ELMSAN1Q6PJG2 1045 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 ACTL9Q8TC94 416 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 AGLP35573 1532 aa17.86■□□□□ 0.45
SYNPO-201ENST00000307662 HMBSP08397 361 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 NEDD8Q15843 81 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ERMARDQ5T6L9 678 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 RNF43Q68DV7 783 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 MREGQ8N565 214 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 OMA1Q96E52 524 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 NDEL1Q9GZM8 345 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 COMMD8Q9NX08 183 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 RABGEF1Q9UJ41 708 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 CROTQ9UKG9 612 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ITGB1BP2Q9UKP3 347 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 MAP3K13O43283 966 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 GUCA1CO95843 209 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ETFBP38117 255 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ST3GAL1Q11201 340 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 VEPH1Q14D04 833 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 POU5F2Q8N7G0 328 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 BDH2Q9BUT1 245 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 PECAM1P16284 738 aaPredicted RBP17.85■□□□□ 0.45
SYNPO-201ENST00000307662 HMGCS2P54868 508 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 NCKAP1LP55160 1127 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ITGA9Q13797 1035 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.85■□□□□ 0.45
SYNPO-201ENST00000307662 GRIP2Q9C0E4 1043 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 TECPR2O15040 1411 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 F8W810 466 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 M0QYT0 321 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 CHN2P52757 468 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 CNGA2Q16280 664 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 XRRA1Q6P2D8 792 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 SVOPQ8N4V2 548 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 C19orf18Q8NEA5 215 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 KCNK4Q9NYG8 393 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ADGRB1O14514 1584 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 VDRP11473 427 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 RRM2P31350 389 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 PTDSS1P48651 473 aaKnown RBP17.85■□□□□ 0.45
SYNPO-201ENST00000307662 ROR2Q01974 943 aaKnown RBP17.85■□□□□ 0.45
SYNPO-201ENST00000307662 FAM172AQ8WUF8 416 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 PPP1R10Q96QC0 940 aaKnown RBP17.85■□□□□ 0.45
SYNPO-201ENST00000307662 VTA1Q9NP79 307 aa17.85■□□□□ 0.45
SYNPO-201ENST00000307662 MED26O95402 600 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 GARTP22102 1010 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 KRT20P35900 424 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 MYBPC2Q14324 1141 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 ZNF720Q7Z2F6 126 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 ERO1BQ86YB8 467 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 FBXL16Q8N461 479 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 WDR60Q8WVS4 1066 aa17.84■□□□□ 0.45
SYNPO-201ENST00000307662 DUSP9Q99956 384 aaKnown RBP17.84■□□□□ 0.45
SYNPO-201ENST00000307662 NOL6Q9H6R4 1146 aaKnown RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms